PPGR - Gene Detail

Basic Information

Gene ID	AmTr_scaff00049.274.v1.0.g View in Genome Browser
Position	AmTr_scaff00049:4803661-4814581 (+) 10920bp
Gene Type	gene
Gene Description (Protein Product)	isoform X1
Organism	Amborella trichopoda
Also AS	AT3G27460AMTR_s00049p00227500

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

AmTr_scaff00090.68.v1.0.g Transcription initiation factor TFIID subunit

AmTr_scaff00092.159.v1.0.g Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket). TREX-2 participates in mRNA export and accurate chromatin positioning in the nucleus by tethering genes to the nuclear periphery

AmTr_scaff00175.27.v1.0.g Belongs to the RuvB family

Regulatory gene

AmTr_scaff00001.225.v1.0.g Floral homeotic protein

AmTr_scaff00001.321.v1.0.g Trihelix transcription factor

AmTr_scaff00001.409.v1.0.g MADS-box protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0006325	chromatin organization	BP
GO:0006464	protein modification process	BP
GO:0006473	protein acetylation	BP
GO:0006475	internal protein amino acid acetylation	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006950	response to stress	BP
GO:0006970	response to osmotic stress	BP
GO:0006996	organelle organization	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009628	response to abiotic stimulus	BP
GO:0009651	response to salt stress	BP
GO:0009987	cellular process	BP
GO:0016043	cellular component organization	BP
GO:0016569	obsolete covalent chromatin modification	BP
GO:0016570	histone modification	BP
GO:0016573	histone acetylation	BP
GO:0018193	peptidyl-amino acid modification	BP
GO:0018205	peptidyl-lysine modification	BP
GO:0018393	internal peptidyl-lysine acetylation	BP
GO:0018394	peptidyl-lysine acetylation	BP
GO:0019538	protein metabolic process	BP
GO:0036211	protein modification process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043412	macromolecule modification	BP
GO:0043543	protein acylation	BP
GO:0043966	histone H3 acetylation	BP
GO:0043967	histone H4 acetylation	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044464	obsolete cell part	CC
GO:0050896	response to stimulus	BP
GO:0051276	chromosome organization	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:1901564	organonitrogen compound metabolic process	BP