Basic Information
Gene ID
AmTr_scaff00057.288.v1.0.g
Position
AmTr_scaff00057:4501059-4507854 (+)
6795bp
Gene Type
gene
Gene Description (Protein Product)
Small nuclear ribonucleoprotein
Organism
Also AS AT3G62840AMTR_s00057p00221440

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AmTr_scaff00061.104.v1.0.g Small nuclear ribonucleoprotein
AmTr_scaff00156.24.v1.0.g U6 snRNA-associated Sm-like protein
AmTr_scaff00064.75.v1.0.g U2 snRNP-associated SURP motif-containing
Regulatory gene
AmTr_scaff00001.225.v1.0.g Floral homeotic protein
AmTr_scaff00001.409.v1.0.g MADS-box protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.