Basic Information
Gene ID
AmTr_scaff00061.211.v1.0.g
Position
AmTr_scaff00061:3210043-3232027 (-)
21984bp
Gene Type
gene
Gene Description (Protein Product)
isoform X1
Organism
Also AS AT3G27325AMTR_s00061p00186110

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AmTr_scaff00104.54.v1.0.g Phosphatidylinositol glycan anchor biosynthesis class U
AmTr_scaff01306.1.v1.0.g Glycosylphosphatidylinositol anchor attachment 1
AmTr_scaff00109.57.v1.0.g phosphatidylinositol N-acetylglucosaminyltransferase
Regulatory gene
AmTr_scaff00001.225.v1.0.g Floral homeotic protein
AmTr_scaff00001.409.v1.0.g MADS-box protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map01100 Metabolic pathways -
map00563 Glycosylphosphatidylinositol(GPI)-anchor biosynthesis Cell surface proteins can be attached to the cell membrane via the glycolipid structure called glycosylphosphatidylinositol (GPI) anchor. Hundreds of GPI-anchored proteins have been identified in many eukaryotes ranging from protozoa and fungi to mammals. All protein-linked GPI anchors share a common core structure, characterized by the substructure Man (a1-4) GlcN (a1-6) myo-inositol-1P-lipid. Biosynthesis of GPI anchors proceeds in three stages: (i) preassembly of a GPI precursor in the ER membrane, (ii) attachment of the GPI to the C-terminus of a newly synthesized protein in the lumen of the ER, and (iii) lipid remodeling and/or carbohydrate side-chain modifications in the ER and the Golgi. Defects of GPI anchor biosynthesis gene result in a genetic disorder, paroxysmal nocturnal hemoglobinuria.