Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
AmTr_scaff00064.92.v1.0.g
View in Genome Browser
Position
AmTr_scaff00064:3507188-3513135 (+)
5947bp
Gene Type
gene
Gene Description (Protein Product)
protein refolding
Organism
Amborella trichopoda
Also AS AT3G23990AMTR_s00064p00195070

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AmTr_scaff00155.16.v1.0.g Belongs to the heat shock protein 70 family
AmTr_scaff01321.1.v1.0.g assists the folding of proteins upon ATP hydrolysis
AmTr_scaff00101.120.v1.0.g Belongs to the GroES chaperonin family
Regulatory gene
AmTr_scaff00001.380.v1.0.g reveille
AmTr_scaff00001.511.v1.0.g Protein LHY-like isoform X1
AmTr_scaff00001.525.v1.0.g transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005739 mitochondrion CC
GO:0005773 vacuole CC
GO:0005774 vacuolar membrane CC
GO:0005829 cytosol CC
GO:0006457 protein folding BP
GO:0006458 'de novo' protein folding BP
GO:0006605 protein targeting BP
GO:0006626 protein targeting to mitochondrion BP
GO:0006810 transport BP
GO:0006839 mitochondrial transport BP
GO:0006886 intracellular protein transport BP
GO:0006996 organelle organization BP
GO:0007005 mitochondrion organization BP
GO:0008104 protein localization BP
GO:0008150 biological_process BP
GO:0009314 response to radiation BP
GO:0009416 response to light stimulus BP
GO:0009453 energy taxis BP
GO:0009605 response to external stimulus BP
GO:0009628 response to abiotic stimulus BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009987 cellular process BP
GO:0010035 response to inorganic substance BP
GO:0010038 response to metal ion BP
GO:0015031 protein transport BP
GO:0015833 peptide transport BP
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0017038 protein import BP
GO:0019954 asexual reproduction BP
GO:0030587 sorocarp development BP
GO:0031090 organelle membrane CC
GO:0031288 sorocarp morphogenesis BP
GO:0032502 developmental process BP
GO:0033036 macromolecule localization BP
GO:0033365 protein localization to organelle BP
GO:0034613 protein localization BP
GO:0040011 locomotion BP
GO:0042221 response to chemical BP
GO:0042330 taxis BP
GO:0042331 phototaxis BP
GO:0042886 amide transport BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044183 protein folding chaperone MF
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044437 obsolete vacuolar part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0044743 protein transmembrane import into intracellular organelle BP
GO:0045041 protein import into mitochondrial intermembrane space BP
GO:0045184 establishment of protein localization BP
GO:0046686 response to cadmium ion BP
GO:0046907 intracellular transport BP
GO:0046956 positive phototaxis BP
GO:0048856 anatomical structure development BP
GO:0050896 response to stimulus BP
GO:0051082 unfolded protein binding MF
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0051703 biological process involved in intraspecies interaction between organisms BP
GO:0051704 obsolete multi-organism process BP
GO:0052128 positive energy taxis BP
GO:0055085 transmembrane transport BP
GO:0061077 chaperone-mediated protein folding BP
GO:0065002 intracellular protein transmembrane transport BP
GO:0070585 protein localization to mitochondrion BP
GO:0070727 cellular macromolecule localization BP
GO:0071702 organic substance transport BP
GO:0071705 nitrogen compound transport BP
GO:0071806 protein transmembrane transport BP
GO:0071840 cellular component organization or biogenesis BP
GO:0072594 establishment of protein localization to organelle BP
GO:0072655 establishment of protein localization to mitochondrion BP
GO:0090702 socially cooperative development BP
GO:0098588 bounding membrane of organelle CC
GO:0098805 membrane CC
GO:0099120 socially cooperative development BP
GO:1990542 mitochondrial transmembrane transport BP
KEGG Term Name Description
map03018 RNA degradation The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.