Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
AmTr_scaff00065.69.v1.0.g
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Position
AmTr_scaff00065:1524729-1551393 (+)
26664bp
Gene Type
gene
Gene Description (Protein Product)
Ribosomal RNA small subunit methyltransferase
Organism
Amborella trichopoda
Also AS AT1G50000AMTR_s00065p00117290

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AmTr_scaff00183.8.v1.0.g Ribosomal protein L11
AmTr_scaff00161.24.v1.0.g Pseudouridine synthase
AmTr_scaff00108.5.v1.0.g Ribosomal RNA small subunit methyltransferase
Regulatory gene
AmTr_scaff00001.225.v1.0.g Floral homeotic protein
AmTr_scaff00001.380.v1.0.g reveille
AmTr_scaff00001.409.v1.0.g MADS-box protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway
GO Term Description GO Category
GO:0000154 rRNA modification BP
GO:0001510 RNA methylation BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006364 rRNA processing BP
GO:0006396 RNA processing BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008168 methyltransferase activity MF
GO:0008170 N-methyltransferase activity MF
GO:0008173 RNA methyltransferase activity MF
GO:0008649 rRNA methyltransferase activity MF
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity MF
GO:0009451 RNA modification BP
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0016070 RNA metabolic process BP
GO:0016072 rRNA metabolic process BP
GO:0016436 rRNA (uridine) methyltransferase activity MF
GO:0016740 transferase activity MF
GO:0016741 transferase activity, transferring one-carbon groups MF
GO:0022613 ribonucleoprotein complex biogenesis BP
GO:0031167 rRNA methylation BP
GO:0032259 methylation BP
GO:0034470 ncRNA processing BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034660 ncRNA metabolic process BP
GO:0042254 ribosome biogenesis BP
GO:0043170 macromolecule metabolic process BP
GO:0043412 macromolecule modification BP
GO:0043414 macromolecule methylation BP
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0046483 heterocycle metabolic process BP
GO:0070042 rRNA (uridine-N3-)-methyltransferase activity MF
GO:0070475 rRNA base methylation BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0090304 nucleic acid metabolic process BP
GO:0140098 catalytic activity, acting on RNA MF
GO:0140102 catalytic activity, acting on a rRNA MF
GO:1901360 organic cyclic compound metabolic process BP