PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Bpev01.c0115.g0119 View in Genome Browser
Position	Contig115:1114483-1120115 (-) 5632bp
Gene Type	gene
Gene Description (Protein Product)	AAA domain (Cdc48 subfamily)
Organism	Betula pendula
Also AS	AT2G29970

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Bpev01.c1395.g0004 F-box LRR-repeat MAX2 homolog Bpev01.c1085.g0006 Topless-related protein Bpev01.c0142.g0065 Topless-related protein
Regulatory gene	Bpev01.c0428.g0006 GAGA binding protein-like family Bpev01.c0718.g0004 Protein BASIC PENTACYSTEINE2-like Bpev01.c1638.g0014 Protein BASIC PENTACYSTEINE4-like

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0008150	biological_process	BP
GO:0009719	response to endogenous stimulus	BP
GO:0009725	response to hormone	BP
GO:0010033	response to organic substance	BP
GO:0014070	response to organic cyclic compound	BP
GO:0033993	response to lipid	BP
GO:0042221	response to chemical	BP
GO:0050896	response to stimulus	BP
GO:1901700	response to oxygen-containing compound	BP
GO:1902347	response to strigolactone	BP