Basic Information
Gene ID
Bpev01.c1505.g0003
Position
Contig1505:25986-27238 (-)
1252bp
Gene Type
gene
Gene Description (Protein Product)
nuclear transport
Organism
Also AS AT3G56900

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Bpev01.c2204.g0001 Nuclear pore membrane glycoprotein
Bpev01.c2183.g0007 THO complex subunit
Bpev01.c1586.g0006 snRNA import into nucleus
Regulatory gene
Bpev01.c0428.g0006 GAGA binding protein-like family
Bpev01.c0718.g0004 Protein BASIC PENTACYSTEINE2-like
Bpev01.c1638.g0014 Protein BASIC PENTACYSTEINE4-like

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map03013 RNA transport RNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) via mobile export receptors. The majority of RNAs, such as tRNAs, rRNAs, and U snRNAs, are transported by specific export receptors, which belong to the karyopherin-beta family proteins. A feature of karyopherins is their regulation by the small GTPase Ran. However, general mRNA export is mechanistically different. Nuclear export of mRNAs is functionally coupled to different steps in gene expression processes, such as transcription, splicing, 3'-end formation and even translation.