PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Bpev01.c1543.g0003 View in Genome Browser
Position	Contig1543:35749-38032 (-) 2283bp
Gene Type	gene
Gene Description (Protein Product)	Polygalacturonase-like
Organism	Betula pendula
Also AS	AT3G59850

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Bpev01.c1968.g0010 Acts in the modification of cell walls via demethylesterification of cell wall pectin Bpev01.c2017.g0001 Alpha-L-arabinofuranosidase Bpev01.c1723.g0005 Acts in the modification of cell walls via demethylesterification of cell wall pectin
Regulatory gene	Bpev01.c0000.g0173 Protein SENSITIVE TO PROTON RHIZOTOXICITY Bpev01.c0029.g0099 Zinc finger AN1 and C2H2 domain-containing stress-associated protein Bpev01.c0042.g0042 lysine-specific demethylase

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005576	extracellular region	CC
GO:0005618	cell wall	CC
GO:0005623	obsolete cell	CC
GO:0030312	external encapsulating structure	CC
GO:0044464	obsolete cell part	CC
GO:0071944	cell periphery	CC

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00040	Pentose and glucuronate interconversions	-