PPGR - Gene Detail

Basic Information

Gene ID	Bpev01.c2878.g0005 View in Genome Browser
Position	Contig2878:48303-51987 (-) 3684bp
Gene Type	gene
Gene Description (Protein Product)	"Catalyzes the reversible reaction in which hydroxymethyl group from 5
Organism	Betula pendula
Also AS	AT3G61530

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Bpev01.c5487.g0003 Catalyzes the oxidation of L-aspartate to iminoaspartate

Bpev01.c5555.g0003 Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate

Bpev01.c5000.g0004 Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine

Regulatory gene

Bpev01.c0015.g0036 Floral homeotic protein APETALA

Bpev01.c0015.g0225 ZINC FINGER protein

Bpev01.c0018.g0095 AP2-like ethylene-responsive transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0003864	3-methyl-2-oxobutanoate hydroxymethyltransferase activity	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005739	mitochondrion	CC
GO:0006082	organic acid metabolic process	BP
GO:0006575	cellular modified amino acid metabolic process	BP
GO:0006732	obsolete coenzyme metabolic process	BP
GO:0006766	vitamin metabolic process	BP
GO:0006767	water-soluble vitamin metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008270	zinc ion binding	MF
GO:0009058	biosynthetic process	BP
GO:0009108	obsolete coenzyme biosynthetic process	BP
GO:0009110	vitamin biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0015939	pantothenate metabolic process	BP
GO:0015940	pantothenate biosynthetic process	BP
GO:0016053	organic acid biosynthetic process	BP
GO:0016740	transferase activity	MF
GO:0016741	transferase activity, transferring one-carbon groups	MF
GO:0016742	hydroxymethyl-, formyl- and related transferase activity	MF
GO:0019752	carboxylic acid metabolic process	BP
GO:0032787	monocarboxylic acid metabolic process	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0042364	water-soluble vitamin biosynthetic process	BP
GO:0042398	cellular modified amino acid biosynthetic process	BP
GO:0043167	ion binding	MF
GO:0043169	cation binding	MF
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043436	oxoacid metabolic process	BP
GO:0043603	amide metabolic process	BP
GO:0043604	amide biosynthetic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044283	small molecule biosynthetic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0046394	carboxylic acid biosynthetic process	BP
GO:0046872	metal ion binding	MF
GO:0046914	transition metal ion binding	MF
GO:0050897	cobalt ion binding	MF
GO:0051186	obsolete cofactor metabolic process	BP
GO:0051188	obsolete cofactor biosynthetic process	BP
GO:0071704	organic substance metabolic process	BP
GO:0072330	monocarboxylic acid biosynthetic process	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00770	Pantothenate and CoA biosynthesis	-