Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Bpev01.c5000.g0004
View in Genome Browser
Position
Contig5000:2027-2819 (+)
792bp
Gene Type
gene
Gene Description (Protein Product)
"Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine
Organism
Betula pendula
Also AS AT3G18030

Gene Structure

upstream:
Get Sequence

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Bpev01.c5124.g0001 glycol catabolic process
Bpev01.c5455.g0002 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
Bpev01.c5612.g0004 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides
Regulatory gene
Bpev01.c0000.g0178 calmodulin-binding transcription activator
Bpev01.c0001.g0043 NAC domain-containing protein
Bpev01.c0001.g0063 Protein LHY-like isoform X1

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000166 nucleotide binding MF
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004632 phosphopantothenate--cysteine ligase activity MF
GO:0004633 phosphopantothenoylcysteine decarboxylase activity MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006163 purine nucleotide metabolic process BP
GO:0006164 purine nucleotide biosynthetic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006732 obsolete coenzyme metabolic process BP
GO:0006753 nucleoside phosphate metabolic process BP
GO:0006793 phosphorus metabolic process BP
GO:0006796 phosphate-containing compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009058 biosynthetic process BP
GO:0009108 obsolete coenzyme biosynthetic process BP
GO:0009117 nucleotide metabolic process BP
GO:0009150 purine ribonucleotide metabolic process BP
GO:0009152 purine ribonucleotide biosynthetic process BP
GO:0009165 nucleotide biosynthetic process BP
GO:0009259 ribonucleotide metabolic process BP
GO:0009260 ribonucleotide biosynthetic process BP
GO:0009987 cellular process BP
GO:0010181 FMN binding MF
GO:0015936 coenzyme A metabolic process BP
GO:0015937 coenzyme A biosynthetic process BP
GO:0016829 lyase activity MF
GO:0016830 carbon-carbon lyase activity MF
GO:0016831 carboxy-lyase activity MF
GO:0016874 ligase activity MF
GO:0016879 ligase activity, forming carbon-nitrogen bonds MF
GO:0016881 acid-amino acid ligase activity MF
GO:0018130 heterocycle biosynthetic process BP
GO:0019438 aromatic compound biosynthetic process BP
GO:0019637 organophosphate metabolic process BP
GO:0019693 ribose phosphate metabolic process BP
GO:0032553 ribonucleotide binding MF
GO:0033865 nucleoside bisphosphate metabolic process BP
GO:0033866 nucleoside bisphosphate biosynthetic process BP
GO:0033875 ribonucleoside bisphosphate metabolic process BP
GO:0034030 ribonucleoside bisphosphate biosynthetic process BP
GO:0034032 purine nucleoside bisphosphate metabolic process BP
GO:0034033 purine nucleoside bisphosphate biosynthetic process BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034654 nucleobase-containing compound biosynthetic process BP
GO:0036094 small molecule binding MF
GO:0043167 ion binding MF
GO:0043168 anion binding MF
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044281 small molecule metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0046390 ribose phosphate biosynthetic process BP
GO:0046483 heterocycle metabolic process BP
GO:0048037 obsolete cofactor binding MF
GO:0050662 obsolete coenzyme binding MF
GO:0051186 obsolete cofactor metabolic process BP
GO:0051188 obsolete cofactor biosynthetic process BP
GO:0055086 nucleobase-containing small molecule metabolic process BP
GO:0071704 organic substance metabolic process BP
GO:0072521 purine-containing compound metabolic process BP
GO:0072522 purine-containing compound biosynthetic process BP
GO:0090407 organophosphate biosynthetic process BP
GO:0097159 organic cyclic compound binding MF
GO:0097367 carbohydrate derivative binding MF
GO:1901135 carbohydrate derivative metabolic process BP
GO:1901137 carbohydrate derivative biosynthetic process BP
GO:1901265 nucleoside phosphate binding MF
GO:1901293 nucleoside phosphate biosynthetic process BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1901566 organonitrogen compound biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP
KEGG Term Name Description
map01100 Metabolic pathways -
map00770 Pantothenate and CoA biosynthesis -