PPGR - Gene Detail

Basic Information

Gene ID	Bpev01.c3058.g0001 View in Genome Browser
Position	Contig3058:3689-3938 (-) 249bp
Gene Type	gene
Gene Description (Protein Product)	"Tubulin is the major constituent of microtubules. It binds two moles of GTP
Organism	Betula pendula
Also AS	AT1G75780

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Bpev01.c3058.g0001 Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain

Bpev01.c3292.g0001 5'-3' exoribonuclease

Bpev01.c5487.g0001 DEAD-box RNA helicase involved in the assembly of the 50S ribosomal subunit at low temperature. Exhibits RNA-stimulated ATP hydrolysis and RNA unwinding activity

Regulatory gene

Bpev01.c0000.g0117 Homeobox associated leucine zipper

Bpev01.c0001.g0024 Homeobox-leucine zipper protein

Bpev01.c0015.g0204 Homeobox-leucine zipper protein ANTHOCYANINLESS

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map04145	Phagosome	Phagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is formed when the specific receptors on the phagocyte surface recognize ligands on the particle surface. After formation, nascent phagosomes progressively acquire digestive characteristics. This maturation of phagosomes involves regulated interaction with the other membrane organelles, including recycling endosomes, late endosomes and lysosomes. The fusion of phagosomes and lysosomes releases toxic products that kill most bacteria and degrade them into fragments. However, some bacteria have strategies to escape the bactericidal mechanisms associated with phagocytosis and survive within host phagocytes.