PPGR - Gene Detail

Basic Information

Gene ID	Bpev01.c3938.g0003 View in Genome Browser
Position	Contig3938:2363-3118 (+) 755bp
Gene Type	gene
Gene Description (Protein Product)	"Member of the two-component regulatory system UvrY BarA involved in the regulation of carbon metabolism via the CsrA CsrB regulatory system. Phosphorylates UvrY
Organism	Betula pendula
Also AS	AT2G25180

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Bpev01.c5322.g0001 Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB

Bpev01.c5245.g0001 Methyl-accepting chemotaxis protein

Bpev01.c5455.g0002 Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate

Regulatory gene

Bpev01.c0000.g0029 transcription factor

Bpev01.c0000.g0030 transcription factor

Bpev01.c0000.g0173 Protein SENSITIVE TO PROTON RHIZOTOXICITY

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000155	phosphorelay sensor kinase activity	MF
GO:0000160	phosphorelay signal transduction system	BP
GO:0000302	response to reactive oxygen species	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004672	protein kinase activity	MF
GO:0004673	protein histidine kinase activity	MF
GO:0005575	cellular_component	CC
GO:0005623	obsolete cell	CC
GO:0005886	plasma membrane	CC
GO:0006464	protein modification process	BP
GO:0006468	protein phosphorylation	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006950	response to stress	BP
GO:0006979	response to oxidative stress	BP
GO:0007154	cell communication	BP
GO:0007165	signal transduction	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009636	response to toxic substance	BP
GO:0009927	histidine phosphotransfer kinase activity	MF
GO:0009987	cellular process	BP
GO:0010033	response to organic substance	BP
GO:0010035	response to inorganic substance	BP
GO:0016020	membrane	CC
GO:0016301	kinase activity	MF
GO:0016310	phosphorylation	BP
GO:0016740	transferase activity	MF
GO:0016772	transferase activity, transferring phosphorus-containing groups	MF
GO:0016773	phosphotransferase activity, alcohol group as acceptor	MF
GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	MF
GO:0018106	peptidyl-histidine phosphorylation	BP
GO:0018193	peptidyl-amino acid modification	BP
GO:0018202	peptidyl-histidine modification	BP
GO:0019538	protein metabolic process	BP
GO:0023014	signal transduction	BP
GO:0023052	signaling	BP
GO:0035556	intracellular signal transduction	BP
GO:0036211	protein modification process	BP
GO:0042221	response to chemical	BP
GO:0042493	response to xenobiotic stimulus	BP
GO:0042542	response to hydrogen peroxide	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043412	macromolecule modification	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044464	obsolete cell part	CC
GO:0046677	response to antibiotic	BP
GO:0046777	protein autophosphorylation	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051716	cellular response to stimulus	BP
GO:0060089	molecular transducer activity	MF
GO:0065007	biological regulation	BP
GO:0070887	cellular response to chemical stimulus	BP
GO:0071310	cellular response to organic substance	BP
GO:0071704	organic substance metabolic process	BP
GO:0071944	cell periphery	CC
GO:0140096	catalytic activity, acting on a protein	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901700	response to oxygen-containing compound	BP