PPGR - Gene Detail

Basic Information

Gene ID	Bpev01.c3938.g0004 View in Genome Browser
Position	Contig3938:3176-4005 (-) 829bp
Gene Type	gene
Gene Description (Protein Product)	Catalyzes the dehydration of glucarate to 5-keto-4- deoxy-D-glucarate (5-kdGluc). Also acts on L-idarate
Organism	Betula pendula
Also AS

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Bpev01.c5170.g0001 Belongs to the glycerate kinase type-1 family

Bpev01.c5247.g0001 Dipeptidase with broad substrate specificity. Requires dipeptide substrates with an unblocked N-terminus and the amino group in the alpha or beta position. Non-protein amino acids and proline are not accepted in the C-terminal position, whereas some dipeptide amides and formyl amino acids are hydrolyzed. Also shows cysteinylglycinase activity, which is sufficient for E.coli to utilize cysteinylglycine as a cysteine source

Bpev01.c5278.g0001 Belongs to the mannitol dehydrogenase family

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000287	magnesium ion binding	MF
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005488	binding	MF
GO:0005975	carbohydrate metabolic process	BP
GO:0006082	organic acid metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008872	glucarate dehydratase activity	MF
GO:0009056	catabolic process	BP
GO:0009987	cellular process	BP
GO:0016052	carbohydrate catabolic process	BP
GO:0016054	organic acid catabolic process	BP
GO:0016829	lyase activity	MF
GO:0016835	carbon-oxygen lyase activity	MF
GO:0016836	hydro-lyase activity	MF
GO:0017144	xenobiotic metabolic process	BP
GO:0019392	glucarate metabolic process	BP
GO:0019394	glucarate catabolic process	BP
GO:0019577	aldaric acid metabolic process	BP
GO:0019579	aldaric acid catabolic process	BP
GO:0019752	carboxylic acid metabolic process	BP
GO:0042737	xenobiotic catabolic process	BP
GO:0042836	D-glucarate metabolic process	BP
GO:0042838	D-glucarate catabolic process	BP
GO:0043167	ion binding	MF
GO:0043169	cation binding	MF
GO:0043436	oxoacid metabolic process	BP
GO:0043648	dicarboxylic acid metabolic process	BP
GO:0043649	dicarboxylic acid catabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044248	cellular catabolic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044282	small molecule catabolic process	BP
GO:0046395	carboxylic acid catabolic process	BP
GO:0046872	metal ion binding	MF
GO:0071704	organic substance metabolic process	BP
GO:1901575	organic substance catabolic process	BP

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00053	Ascorbate and aldarate metabolism	-