PPGR - Gene Detail

Basic Information

Gene ID	Bpev01.c4879.g0002 View in Genome Browser
Position	Contig4879:333-1766 (+) 1433bp
Gene Type	gene
Gene Description (Protein Product)	belongs to the carbohydrate kinase PfkB family
Organism	Betula pendula
Also AS	AT2G38670

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Bpev01.c5353.g0001 Catalyzes the reversible epimerization at C-2 of UDP-N- acetylglucosamine (UDP-GlcNAc) and thereby provides bacteria with UDP-N-acetylmannosamine (UDP-ManNAc), the activated donor of ManNAc residues

Bpev01.c5525.g0001 Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate

Bpev01.c5265.g0002 Belongs to the transferase hexapeptide repeat family

Regulatory gene

Bpev01.c0023.g0052 Ocs element-binding factor

Bpev01.c0027.g0042 transcription factor

Bpev01.c0029.g0035 transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000271	polysaccharide biosynthetic process	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0005975	carbohydrate metabolic process	BP
GO:0005976	polysaccharide metabolic process	BP
GO:0006629	lipid metabolic process	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008219	cell death	BP
GO:0008610	lipid biosynthetic process	BP
GO:0008653	lipopolysaccharide metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009103	lipopolysaccharide biosynthetic process	BP
GO:0009244	lipopolysaccharide core region biosynthetic process	BP
GO:0009311	oligosaccharide metabolic process	BP
GO:0009312	oligosaccharide biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0012501	programmed cell death	BP
GO:0016051	carbohydrate biosynthetic process	BP
GO:0016301	kinase activity	MF
GO:0016310	phosphorylation	BP
GO:0016740	transferase activity	MF
GO:0016772	transferase activity, transferring phosphorus-containing groups	MF
GO:0016779	nucleotidyltransferase activity	MF
GO:0019200	carbohydrate kinase activity	MF
GO:0033692	cellular polysaccharide biosynthetic process	BP
GO:0033785	heptose 7-phosphate kinase activity	MF
GO:0033786	heptose-1-phosphate adenylyltransferase activity	MF
GO:0034637	cellular carbohydrate biosynthetic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044255	cellular lipid metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044262	cellular carbohydrate metabolic process	BP
GO:0044264	cellular polysaccharide metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0046401	lipopolysaccharide core region metabolic process	BP
GO:0046835	carbohydrate phosphorylation	BP
GO:0070566	adenylyltransferase activity	MF
GO:0071704	organic substance metabolic process	BP
GO:1901135	carbohydrate derivative metabolic process	BP
GO:1901137	carbohydrate derivative biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1903509	liposaccharide metabolic process	BP

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map01100	Metabolic pathways	-