PPGR - Gene Detail

Basic Information

Gene ID	Bpev01.c5265.g0002 View in Genome Browser
Position	Contig5265:536-1357 (-) 821bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the transferase hexapeptide repeat family
Organism	Betula pendula
Also AS	AT5G56760

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Bpev01.c5353.g0001 Catalyzes the reversible epimerization at C-2 of UDP-N- acetylglucosamine (UDP-GlcNAc) and thereby provides bacteria with UDP-N-acetylmannosamine (UDP-ManNAc), the activated donor of ManNAc residues

Bpev01.c5392.g0002 The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate

Bpev01.c5278.g0001 Belongs to the mannitol dehydrogenase family

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000096	sulfur amino acid metabolic process	BP
GO:0000097	sulfur amino acid biosynthetic process	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0006082	organic acid metabolic process	BP
GO:0006520	amino acid metabolic process	BP
GO:0006534	cysteine metabolic process	BP
GO:0006535	cysteine biosynthetic process from serine	BP
GO:0006563	L-serine metabolic process	BP
GO:0006790	sulfur compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008374	O-acyltransferase activity	MF
GO:0008652	amino acid biosynthetic process	BP
GO:0009001	serine O-acetyltransferase activity	MF
GO:0009058	biosynthetic process	BP
GO:0009069	serine family amino acid metabolic process	BP
GO:0009070	serine family amino acid biosynthetic process	BP
GO:0009314	response to radiation	BP
GO:0009333	cysteine synthase complex	CC
GO:0009628	response to abiotic stimulus	BP
GO:0009987	cellular process	BP
GO:0010165	response to X-ray	BP
GO:0010212	response to ionizing radiation	BP
GO:0016053	organic acid biosynthetic process	BP
GO:0016407	acetyltransferase activity	MF
GO:0016412	serine O-acyltransferase activity	MF
GO:0016413	O-acetyltransferase activity	MF
GO:0016740	transferase activity	MF
GO:0016746	acyltransferase activity	MF
GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	MF
GO:0019344	cysteine biosynthetic process	BP
GO:0019752	carboxylic acid metabolic process	BP
GO:0032991	protein-containing complex	CC
GO:0043436	oxoacid metabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044272	sulfur compound biosynthetic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044283	small molecule biosynthetic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0046394	carboxylic acid biosynthetic process	BP
GO:0050896	response to stimulus	BP
GO:0071704	organic substance metabolic process	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901605	alpha-amino acid metabolic process	BP
GO:1901607	alpha-amino acid biosynthetic process	BP
GO:1902494	catalytic complex	CC
GO:1990234	transferase complex	CC

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00920	Sulfur metabolism	-
map00270	Cysteine and methionine metabolism	Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].