Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Bpev01.c4958.g0001
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Position
Contig4958:10-1387 (+)
1377bp
Gene Type
gene
Gene Description (Protein Product)
Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
Organism
Betula pendula
Also AS

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Bpev01.c5245.g0001 Methyl-accepting chemotaxis protein
Bpev01.c5612.g0004 Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides
Bpev01.c5377.g0002 Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000270 peptidoglycan metabolic process BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0005575 cellular_component CC
GO:0005623 obsolete cell CC
GO:0005886 plasma membrane CC
GO:0005887 plasma membrane CC
GO:0006022 aminoglycan metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008932 lytic endotransglycosylase activity MF
GO:0008933 lytic transglycosylase activity MF
GO:0016020 membrane CC
GO:0016021 membrane CC
GO:0016740 transferase activity MF
GO:0016757 glycosyltransferase activity MF
GO:0030203 glycosaminoglycan metabolic process BP
GO:0030288 outer membrane-bounded periplasmic space CC
GO:0030313 cell envelope CC
GO:0031224 obsolete intrinsic component of membrane CC
GO:0031226 obsolete intrinsic component of plasma membrane CC
GO:0031975 envelope CC
GO:0042597 periplasmic space CC
GO:0043170 macromolecule metabolic process BP
GO:0044425 obsolete membrane part CC
GO:0044459 obsolete plasma membrane part CC
GO:0044464 obsolete cell part CC
GO:0061783 peptidoglycan muralytic activity MF
GO:0071704 organic substance metabolic process BP
GO:0071944 cell periphery CC
GO:1901135 carbohydrate derivative metabolic process BP
GO:1901564 organonitrogen compound metabolic process BP