PPGR - Gene Detail

Basic Information

Gene ID	Bpev01.c4986.g0002 View in Genome Browser
Position	Contig4986:10947-12032 (+) 1085bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the peptidase S11 family
Organism	Betula pendula
Also AS

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Bpev01.c5304.g0001 A murein DD-endopeptidase with specificity for D-Ala- meso-diaminopimelic acid (mDAP) cross-links. Its role is probably to cleave D-Ala-mDAP cross-links to allow insertion of new glycans and thus cell wall expansion. Functionally redundant with MepM and MepH. Partially suppresses an mepS disruption mutant

Bpev01.c5553.g0001 Hydrolyzes the cross-linked dimers tetrapentapeptide (D45) and tetratetrapeptide (D44). Removes the terminal D-alanine from muropeptides and disaccharide pentapeptide M5 with a C- terminal D-Ala-D-Ala dipeptide. Associated with recycling and remodeling of peptidoglycan (PG)

Bpev01.c5612.g0003 D-alanyl-D-alanine carboxypeptidase

Regulatory gene

Bpev01.c0015.g0225 ZINC FINGER protein

Bpev01.c0027.g0145 Dof zinc finger protein

Bpev01.c0121.g0036 dof zinc finger protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000270	peptidoglycan metabolic process	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004175	endopeptidase activity	MF
GO:0004180	carboxypeptidase activity	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005623	obsolete cell	CC
GO:0005886	plasma membrane	CC
GO:0005887	plasma membrane	CC
GO:0006022	aminoglycan metabolic process	BP
GO:0006023	aminoglycan biosynthetic process	BP
GO:0006024	glycosaminoglycan biosynthetic process	BP
GO:0006508	proteolysis	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008144	obsolete drug binding	MF
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008233	peptidase activity	MF
GO:0008238	exopeptidase activity	MF
GO:0008360	regulation of cell shape	BP
GO:0008658	penicillin binding	MF
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009252	peptidoglycan biosynthetic process	BP
GO:0009273	peptidoglycan-based cell wall biogenesis	BP
GO:0009987	cellular process	BP
GO:0016020	membrane	CC
GO:0016021	membrane	CC
GO:0016787	hydrolase activity	MF
GO:0019538	protein metabolic process	BP
GO:0022603	regulation of anatomical structure morphogenesis	BP
GO:0022604	regulation of cell morphogenesis	BP
GO:0030203	glycosaminoglycan metabolic process	BP
GO:0031224	obsolete intrinsic component of membrane	CC
GO:0031226	obsolete intrinsic component of plasma membrane	CC
GO:0031406	carboxylic acid binding	MF
GO:0033218	amide binding	MF
GO:0033293	monocarboxylic acid binding	MF
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0036094	small molecule binding	MF
GO:0042221	response to chemical	BP
GO:0042493	response to xenobiotic stimulus	BP
GO:0042546	cell wall biogenesis	BP
GO:0043167	ion binding	MF
GO:0043168	anion binding	MF
GO:0043170	macromolecule metabolic process	BP
GO:0043177	organic acid binding	MF
GO:0044036	cell wall macromolecule metabolic process	BP
GO:0044038	cell wall macromolecule biosynthetic process	BP
GO:0044085	cellular component biogenesis	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044425	obsolete membrane part	CC
GO:0044459	obsolete plasma membrane part	CC
GO:0044464	obsolete cell part	CC
GO:0050789	regulation of biological process	BP
GO:0050793	regulation of developmental process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051128	regulation of cellular component organization	BP
GO:0065007	biological regulation	BP
GO:0065008	regulation of biological quality	BP
GO:0070011	peptidase activity	MF
GO:0070589	cellular component macromolecule biosynthetic process	BP
GO:0071554	cell wall organization or biogenesis	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0071944	cell periphery	CC
GO:0097159	organic cyclic compound binding	MF
GO:0140096	catalytic activity, acting on a protein	MF
GO:1901135	carbohydrate derivative metabolic process	BP
GO:1901137	carbohydrate derivative biosynthetic process	BP
GO:1901363	heterocyclic compound binding	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901681	sulfur compound binding	MF

KEGG Term	Name	Description
map01100	Metabolic pathways	-