Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Bpev01.c5553.g0001
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Position
Contig5553:114-998 (+)
884bp
Gene Type
gene
Gene Description (Protein Product)
Hydrolyzes the cross-linked dimers tetrapentapeptide (D45) and tetratetrapeptide (D44). Removes the terminal D-alanine from muropeptides and disaccharide pentapeptide M5 with a C- terminal D-Ala-D-Ala dipeptide. Associated with recycling and remodeling of peptidoglycan (PG)
Organism
Betula pendula
Also AS

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Bpev01.c5612.g0002 PFAM Peptidase S13, D-Ala-D-Ala carboxypeptidase C
Bpev01.c5612.g0003 D-alanyl-D-alanine carboxypeptidase
Bpev01.c5586.g0002 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000270 peptidoglycan metabolic process BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004175 endopeptidase activity MF
GO:0004180 carboxypeptidase activity MF
GO:0005488 binding MF
GO:0006022 aminoglycan metabolic process BP
GO:0006026 aminoglycan catabolic process BP
GO:0006027 glycosaminoglycan catabolic process BP
GO:0006508 proteolysis BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008144 obsolete drug binding MF
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008233 peptidase activity MF
GO:0008238 exopeptidase activity MF
GO:0008360 regulation of cell shape BP
GO:0008658 penicillin binding MF
GO:0009056 catabolic process BP
GO:0009057 macromolecule catabolic process BP
GO:0009253 peptidoglycan catabolic process BP
GO:0016787 hydrolase activity MF
GO:0019538 protein metabolic process BP
GO:0022603 regulation of anatomical structure morphogenesis BP
GO:0022604 regulation of cell morphogenesis BP
GO:0030203 glycosaminoglycan metabolic process BP
GO:0031406 carboxylic acid binding MF
GO:0033218 amide binding MF
GO:0033293 monocarboxylic acid binding MF
GO:0036094 small molecule binding MF
GO:0043167 ion binding MF
GO:0043168 anion binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043177 organic acid binding MF
GO:0044238 primary metabolic process BP
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0050794 regulation of cellular process BP
GO:0051128 regulation of cellular component organization BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0070011 peptidase activity MF
GO:0071704 organic substance metabolic process BP
GO:0097159 organic cyclic compound binding MF
GO:0140096 catalytic activity, acting on a protein MF
GO:1901135 carbohydrate derivative metabolic process BP
GO:1901136 carbohydrate derivative catabolic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1901565 organonitrogen compound catabolic process BP
GO:1901575 organic substance catabolic process BP
GO:1901681 sulfur compound binding MF