PPGR - Gene Detail

Basic Information

Gene ID	Bpev01.c5047.g0002 View in Genome Browser
Position	Contig5047:1192-2022 (-) 830bp
Gene Type	gene
Gene Description (Protein Product)	"transmembrane proton channel. Overexpression of MotA
Organism	Betula pendula
Also AS

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Bpev01.c5322.g0001 Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB

Bpev01.c5245.g0001 Methyl-accepting chemotaxis protein

Bpev01.c5460.g0001 Member of the two-component regulatory system AtoS AtoC. In the presence of acetoacetate, AtoS AtoC stimulates the expression of the atoDAEB operon, leading to short chain fatty acid catabolism and activation of the poly-(R)-3-hydroxybutyrate (cPHB) biosynthetic pathway. Also induces the operon in response to spermidine. Involved in the regulation of motility and chemotaxis, via transcriptional induction of the flagellar regulon. AtoC acts by binding directly to the promoter region of the target genes. In addition to its role as a transcriptional regulator, functions as a post- translational regulator that inhibits polyamine biosynthesis via regulation of ornithine decarboxylase (ODC)

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0001539	cilium or flagellum-dependent cell motility	BP
GO:0005575	cellular_component	CC
GO:0005623	obsolete cell	CC
GO:0005886	plasma membrane	CC
GO:0005887	plasma membrane	CC
GO:0006928	obsolete movement of cell or subcellular component	BP
GO:0008150	biological_process	BP
GO:0009288	bacterial-type flagellum	CC
GO:0009425	bacterial-type flagellum basal body	CC
GO:0009987	cellular process	BP
GO:0016020	membrane	CC
GO:0016021	membrane	CC
GO:0031224	obsolete intrinsic component of membrane	CC
GO:0031226	obsolete intrinsic component of plasma membrane	CC
GO:0040011	locomotion	BP
GO:0042995	cell projection	CC
GO:0043226	organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0044422	obsolete organelle part	CC
GO:0044425	obsolete membrane part	CC
GO:0044459	obsolete plasma membrane part	CC
GO:0044461	obsolete bacterial-type flagellum part	CC
GO:0044463	obsolete cell projection part	CC
GO:0044464	obsolete cell part	CC
GO:0048870	cell motility	BP
GO:0051179	localization	BP
GO:0051674	localization of cell	BP
GO:0071944	cell periphery	CC
GO:0071973	bacterial-type flagellum-dependent cell motility	BP
GO:0071978	bacterial-type flagellum-dependent swarming motility	BP
GO:0097588	archaeal or bacterial-type flagellum-dependent cell motility	BP
GO:0120100	bacterial-type flagellum motor	CC
GO:0120101	bacterial-type flagellum stator complex	CC