PPGR - Gene Detail

Gene ID	Bpev01.c5056.g0001 View in Genome Browser
Position	Contig5056:160-1176 (+) 1016bp
Gene Type	gene
Gene Description (Protein Product)	Part of the ABC transporter complex CysAWTP (TC 3.A.1.6.1) involved in sulfate thiosulfate import. This protein specifically binds thiosulfate and is involved in its transmembrane transport
Organism	Betula pendula
Also AS

upstream:

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Protein-protein interaction (PPI)

Bpev01.c5149.g0003 ABC transporter

Bpev01.c5149.g0002 Belongs to the SsuD family

Bpev01.c5198.g0001 an anaerobic reaction coupled to energy-yielding reactions

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Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005623	obsolete cell	CC
GO:0006790	sulfur compound metabolic process	BP
GO:0006810	transport	BP
GO:0006811	monoatomic ion transport	BP
GO:0006820	monoatomic anion transport	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008272	sulfate transport	BP
GO:0009987	cellular process	BP
GO:0015698	inorganic anion transport	BP
GO:0015709	thiosulfate transport	BP
GO:0030288	outer membrane-bounded periplasmic space	CC
GO:0030313	cell envelope	CC
GO:0031975	envelope	CC
GO:0036173	thiosulfate binding	MF
GO:0042597	periplasmic space	CC
GO:0043167	ion binding	MF
GO:0043168	anion binding	MF
GO:0043199	sulfate binding	MF
GO:0044237	cellular metabolic process	BP
GO:0044464	obsolete cell part	CC
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0072348	sulfur compound transport	BP
GO:1901681	sulfur compound binding	MF

KEGG Term	Name	Description
map02010	ABC transporters	The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
map00920	Sulfur metabolism	-