PPGR - Gene Detail

Basic Information

Gene ID	Bpev01.c5108.g0001 View in Genome Browser
Position	Contig5108:244-2378 (-) 2134bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
Organism	Betula pendula
Also AS

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Bpev01.c5615.g0002 Part of the anaerobic respiratory chain of trimethylamine-N-oxide reductase TorA. Acts by transferring electrons from the membranous menaquinones to TorA. This transfer probably involves an electron transfer pathway from menaquinones to the N-terminal domain of TorC, then from the N-terminus to the C-terminus, and finally to TorA. TorC apocytochrome negatively autoregulates the torCAD operon probably by inhibiting the TorS kinase activity

Bpev01.c5260.g0004 Belongs to the nitrite and sulfite reductase 4Fe-4S domain family

Bpev01.c5247.g0001 Dipeptidase with broad substrate specificity. Requires dipeptide substrates with an unblocked N-terminus and the amino group in the alpha or beta position. Non-protein amino acids and proline are not accepted in the C-terminal position, whereas some dipeptide amides and formyl amino acids are hydrolyzed. Also shows cysteinylglycinase activity, which is sufficient for E.coli to utilize cysteinylglycine as a cysteine source

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0006082	organic acid metabolic process	BP
GO:0006091	generation of precursor metabolites and energy	BP
GO:0006950	response to stress	BP
GO:0006974	cellular response to DNA damage stimulus	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009326	formate dehydrogenase complex	CC
GO:0009987	cellular process	BP
GO:0015942	formate metabolic process	BP
GO:0015944	formate oxidation	BP
GO:0015980	energy derivation by oxidation of organic compounds	BP
GO:0016491	oxidoreductase activity	MF
GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	MF
GO:0016999	antibiotic metabolic process	BP
GO:0017144	xenobiotic metabolic process	BP
GO:0019752	carboxylic acid metabolic process	BP
GO:0032787	monocarboxylic acid metabolic process	BP
GO:0032991	protein-containing complex	CC
GO:0033554	cellular response to stress	BP
GO:0036397	formate dehydrogenase (quinone) activity	MF
GO:0043436	oxoacid metabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0045333	cellular respiration	BP
GO:0050896	response to stimulus	BP
GO:0051716	cellular response to stimulus	BP
GO:0052738	oxidoreductase activity, acting on the aldehyde or oxo group of donors, with a quinone or similar compound as acceptor	MF
GO:0055114	obsolete oxidation-reduction process	BP
GO:0071704	organic substance metabolic process	BP
GO:1902494	catalytic complex	CC

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00630	Glyoxylate and dicarboxylate metabolism	-