PPGR - Gene Detail

Basic Information

Gene ID	Bpev01.c5260.g0004 View in Genome Browser
Position	Contig5260:7290-10074 (-) 2784bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
Organism	Betula pendula
Also AS	AT3G27820

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Bpev01.c5615.g0002 Part of the anaerobic respiratory chain of trimethylamine-N-oxide reductase TorA. Acts by transferring electrons from the membranous menaquinones to TorA. This transfer probably involves an electron transfer pathway from menaquinones to the N-terminal domain of TorC, then from the N-terminus to the C-terminus, and finally to TorA. TorC apocytochrome negatively autoregulates the torCAD operon probably by inhibiting the TorS kinase activity

Bpev01.c5430.g0001 Catalyzes the NAD-dependent oxidation of glycerol to dihydroxyacetone (glycerone). Allows microorganisms to utilize glycerol as a source of carbon under anaerobic conditions. In E.coli, an important role of GldA is also likely to regulate the intracellular level of dihydroxyacetone by catalyzing the reverse reaction, i.e. the conversion of dihydroxyacetone into glycerol. Possesses a broad substrate specificity, since it is also able to oxidize 1,2-propanediol and to reduce glycolaldehyde, methylglyoxal and hydroxyacetone into ethylene glycol, lactaldehyde and 1,2-propanediol, respectively

Bpev01.c5581.g0003 COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000166	nucleotide binding	MF
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005623	obsolete cell	CC
GO:0006091	generation of precursor metabolites and energy	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008942	nitrite reductase [NAD(P)H] activity	MF
GO:0009061	anaerobic respiration	BP
GO:0009344	nitrite reductase complex [NAD(P)H]	CC
GO:0009987	cellular process	BP
GO:0015980	energy derivation by oxidation of organic compounds	BP
GO:0016491	oxidoreductase activity	MF
GO:0016661	oxidoreductase activity, acting on other nitrogenous compounds as donors	MF
GO:0020037	heme binding	MF
GO:0032991	protein-containing complex	CC
GO:0036094	small molecule binding	MF
GO:0043167	ion binding	MF
GO:0043168	anion binding	MF
GO:0044237	cellular metabolic process	BP
GO:0044464	obsolete cell part	CC
GO:0045333	cellular respiration	BP
GO:0046857	oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor	MF
GO:0046906	tetrapyrrole binding	MF
GO:0048037	obsolete cofactor binding	MF
GO:0050660	flavin adenine dinucleotide binding	MF
GO:0050661	NADP binding	MF
GO:0050662	obsolete coenzyme binding	MF
GO:0051536	iron-sulfur cluster binding	MF
GO:0051540	metal cluster binding	MF
GO:0055114	obsolete oxidation-reduction process	BP
GO:0097159	organic cyclic compound binding	MF
GO:0098809	nitrite reductase activity	MF
GO:1901265	nucleoside phosphate binding	MF
GO:1901363	heterocyclic compound binding	MF

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00910	Nitrogen metabolism	-