PPGR - Gene Detail

Basic Information

Gene ID	Bpev01.c5160.g0002 View in Genome Browser
Position	Contig5160:558-1900 (-) 1342bp
Gene Type	gene
Gene Description (Protein Product)	"Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine. To a lesser extent
Organism	Betula pendula
Also AS

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Bpev01.c5265.g0002 Belongs to the transferase hexapeptide repeat family

Bpev01.c5160.g0004 homoserine dehydrogenase I

Bpev01.c5160.g0005 homoserine dehydrogenase I

Load All Networks

Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004795	threonine synthase activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0006082	organic acid metabolic process	BP
GO:0006520	amino acid metabolic process	BP
GO:0006566	threonine metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008652	amino acid biosynthetic process	BP
GO:0009058	biosynthetic process	BP
GO:0009066	aspartate family amino acid metabolic process	BP
GO:0009067	aspartate family amino acid biosynthetic process	BP
GO:0009088	threonine biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0016053	organic acid biosynthetic process	BP
GO:0016829	lyase activity	MF
GO:0016835	carbon-oxygen lyase activity	MF
GO:0016838	carbon-oxygen lyase activity, acting on phosphates	MF
GO:0019752	carboxylic acid metabolic process	BP
GO:0043436	oxoacid metabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044283	small molecule biosynthetic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0046394	carboxylic acid biosynthetic process	BP
GO:0071704	organic substance metabolic process	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901605	alpha-amino acid metabolic process	BP
GO:1901607	alpha-amino acid biosynthetic process	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00750	Vitamin B6 metabolism	-
map00260	Glycine, serine and threonine metabolism	Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].