Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Bpev01.c5434.g0001
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Position
Contig5434:50-2205 (+)
2155bp
Gene Type
gene
Gene Description (Protein Product)
"Responsible for the transport of dicarboxylates such as succinate
Organism
Betula pendula
Also AS

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Bpev01.c5460.g0001 Member of the two-component regulatory system AtoS AtoC. In the presence of acetoacetate, AtoS AtoC stimulates the expression of the atoDAEB operon, leading to short chain fatty acid catabolism and activation of the poly-(R)-3-hydroxybutyrate (cPHB) biosynthetic pathway. Also induces the operon in response to spermidine. Involved in the regulation of motility and chemotaxis, via transcriptional induction of the flagellar regulon. AtoC acts by binding directly to the promoter region of the target genes. In addition to its role as a transcriptional regulator, functions as a post- translational regulator that inhibits polyamine biosynthesis via regulation of ornithine decarboxylase (ODC)
Bpev01.c5460.g0002 Member of the two-component regulatory system AtoS AtoC. In the presence of acetoacetate, AtoS AtoC stimulates the expression of the atoDAEB operon, leading to short chain fatty acid catabolism and activation of the poly-(R)-3-hydroxybutyrate (cPHB) biosynthetic pathway. Also induces the operon in response to spermidine. Involved in the regulation of motility and chemotaxis, via transcriptional induction of the flagellar regulon. AtoS is a membrane-associated kinase that phosphorylates and activates AtoC in response to environmental signals
Bpev01.c5462.g0007 Represses ulaG and the ulaABCDEF operon

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0003333 amino acid transmembrane transport BP
GO:0003674 molecular_function MF
GO:0005215 transporter activity MF
GO:0005310 dicarboxylic acid transmembrane transporter activity MF
GO:0005326 neurotransmitter transmembrane transporter activity MF
GO:0005342 organic acid transmembrane transporter activity MF
GO:0005575 cellular_component CC
GO:0005623 obsolete cell CC
GO:0005886 plasma membrane CC
GO:0005887 plasma membrane CC
GO:0006810 transport BP
GO:0006811 monoatomic ion transport BP
GO:0006812 monoatomic cation transport BP
GO:0006820 monoatomic anion transport BP
GO:0006835 dicarboxylic acid transport BP
GO:0006836 neurotransmitter transport BP
GO:0006855 xenobiotic transmembrane transport BP
GO:0006865 amino acid transport BP
GO:0006950 response to stress BP
GO:0006974 cellular response to DNA damage stimulus BP
GO:0008150 biological_process BP
GO:0008324 monoatomic cation transmembrane transporter activity MF
GO:0008509 monoatomic anion transmembrane transporter activity MF
GO:0008514 organic anion transmembrane transporter activity MF
GO:0009987 cellular process BP
GO:0015075 monoatomic ion transmembrane transporter activity MF
GO:0015077 inorganic cation transmembrane transporter activity MF
GO:0015078 proton transmembrane transporter activity MF
GO:0015138 fumarate transmembrane transporter activity MF
GO:0015140 malate transmembrane transporter activity MF
GO:0015141 succinate transmembrane transporter activity MF
GO:0015171 amino acid transmembrane transporter activity MF
GO:0015172 acidic amino acid transmembrane transporter activity MF
GO:0015179 L-amino acid transmembrane transporter activity MF
GO:0015183 L-aspartate transmembrane transporter activity MF
GO:0015238 xenobiotic transmembrane transporter activity MF
GO:0015291 secondary active transmembrane transporter activity MF
GO:0015293 symporter activity MF
GO:0015294 solute:monoatomic cation symporter activity MF
GO:0015295 solute:proton symporter activity MF
GO:0015318 inorganic molecular entity transmembrane transporter activity MF
GO:0015366 malate:proton symporter activity MF
GO:0015556 C4-dicarboxylate transmembrane transporter activity MF
GO:0015672 inorganic cation transmembrane transport BP
GO:0015711 organic anion transport BP
GO:0015740 C4-dicarboxylate transport BP
GO:0015741 fumarate transport BP
GO:0015743 malate transport BP
GO:0015744 succinate transport BP
GO:0015800 acidic amino acid transport BP
GO:0015807 L-amino acid transport BP
GO:0015849 organic acid transport BP
GO:0015893 xenobiotic transport BP
GO:0016020 membrane CC
GO:0016021 membrane CC
GO:0022804 active transmembrane transporter activity MF
GO:0022857 transmembrane transporter activity MF
GO:0022890 inorganic cation transmembrane transporter activity MF
GO:0031224 obsolete intrinsic component of membrane CC
GO:0031226 obsolete intrinsic component of plasma membrane CC
GO:0033554 cellular response to stress BP
GO:0034220 monoatomic ion transmembrane transport BP
GO:0042221 response to chemical BP
GO:0042493 response to xenobiotic stimulus BP
GO:0044425 obsolete membrane part CC
GO:0044459 obsolete plasma membrane part CC
GO:0044464 obsolete cell part CC
GO:0046942 carboxylic acid transport BP
GO:0046943 carboxylic acid transmembrane transporter activity MF
GO:0050896 response to stimulus BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051716 cellular response to stimulus BP
GO:0055085 transmembrane transport BP
GO:0070778 L-aspartate transmembrane transport BP
GO:0071422 succinate transmembrane transport BP
GO:0071423 malate transmembrane transport BP
GO:0071702 organic substance transport BP
GO:0071705 nitrogen compound transport BP
GO:0071944 cell periphery CC
GO:0098655 monoatomic cation transmembrane transport BP
GO:0098656 monoatomic anion transmembrane transport BP
GO:0098660 inorganic ion transmembrane transport BP
GO:0098662 inorganic cation transmembrane transport BP
GO:1902475 L-alpha-amino acid transmembrane transport BP
GO:1902600 proton transmembrane transport BP
GO:1903825 organic acid transmembrane transport BP
GO:1905039 carboxylic acid transmembrane transport BP