Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
CSS0001001.g
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Position
Chr6:150788702-150792484 (-)
3782bp
Gene Type
gene
Gene Description (Protein Product)
U5 small nuclear ribonucleoprotein 200 kDa
Organism
Camellia sinensis
Also AS AT1G20960

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
CSS0040726.g 116 kDa U5 small nuclear ribonucleoprotein
CSS0039767.g Zinc finger CCCH domain-containing protein
CSS0018492.g Zinc finger CCCH domain-containing protein
Regulatory gene
CSS0000220.g Transcription factor
CSS0000442.g transcription factor
CSS0000465.g SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0005575 cellular_component CC
GO:0005911 cell-cell junction CC
GO:0009506 plasmodesma CC
GO:0030054 cell junction CC
GO:0055044 symplast CC
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.