PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	CSS0028609.g View in Genome Browser
Position	Chr6:149812086-149832703 (+) 20617bp
Gene Type	gene
Gene Description (Protein Product)	U4 U6.U5 tri-snRNP-associated protein
Organism	Camellia sinensis
Also AS	AT5G16780

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	CSS0033617.g U-box domain-containing protein CSS0040726.g 116 kDa U5 small nuclear ribonucleoprotein CSS0037940.g U4 U6 small nuclear ribonucleoprotein PRP4-like protein
Regulatory gene	CSS0000305.g Zinc finger protein CSS0000556.g transcription factor CSS0000859.g MADS-box transcription factor

Load All Networks

Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map03040	Spliceosome	After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.