PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	CSS0046019.g View in Genome Browser
Position	Chr5:2458147-2494150 (+) 36003bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the phosphoglycerate kinase family
Organism	Camellia sinensis
Also AS	AT1G79550

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	CSS0048494.g phosphoenolpyruvate carboxylase CSS0050017.g Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA CSS0046841.g Triosephosphate isomerase
Regulatory gene	CSS0000128.g tesmin tso1-like cxc CSS0000333.g Homeobox-leucine zipper protein CSS0001102.g homeobox-leucine zipper protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0002237	response to molecule of bacterial origin	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004618	phosphoglycerate kinase activity	MF
GO:0004672	protein kinase activity	MF
GO:0005575	cellular_component	CC
GO:0005576	extracellular region	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005737	cytoplasm	CC
GO:0005773	vacuole	CC
GO:0005774	vacuolar membrane	CC
GO:0005829	cytosol	CC
GO:0005886	plasma membrane	CC
GO:0005911	cell-cell junction	CC
GO:0005975	carbohydrate metabolic process	BP
GO:0006082	organic acid metabolic process	BP
GO:0006090	pyruvate metabolic process	BP
GO:0006091	generation of precursor metabolites and energy	BP
GO:0006096	glycolytic process	BP
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006163	purine nucleotide metabolic process	BP
GO:0006164	purine nucleotide biosynthetic process	BP
GO:0006165	nucleoside diphosphate phosphorylation	BP
GO:0006464	protein modification process	BP
GO:0006468	protein phosphorylation	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006732	obsolete coenzyme metabolic process	BP
GO:0006733	obsolete oxidoreduction coenzyme metabolic process	BP
GO:0006753	nucleoside phosphate metabolic process	BP
GO:0006754	ATP biosynthetic process	BP
GO:0006757	ATP generation from ADP	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006950	response to stress	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009056	catabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009108	obsolete coenzyme biosynthetic process	BP
GO:0009117	nucleotide metabolic process	BP
GO:0009123	nucleoside monophosphate metabolic process	BP
GO:0009124	nucleoside monophosphate biosynthetic process	BP
GO:0009126	purine nucleoside monophosphate metabolic process	BP
GO:0009127	purine nucleoside monophosphate biosynthetic process	BP
GO:0009132	nucleoside diphosphate metabolic process	BP
GO:0009135	purine nucleoside diphosphate metabolic process	BP
GO:0009141	nucleoside triphosphate metabolic process	BP
GO:0009142	nucleoside triphosphate biosynthetic process	BP
GO:0009144	purine nucleoside triphosphate metabolic process	BP
GO:0009145	purine nucleoside triphosphate biosynthetic process	BP
GO:0009150	purine ribonucleotide metabolic process	BP
GO:0009152	purine ribonucleotide biosynthetic process	BP
GO:0009156	ribonucleoside monophosphate biosynthetic process	BP
GO:0009161	ribonucleoside monophosphate metabolic process	BP
GO:0009165	nucleotide biosynthetic process	BP
GO:0009166	nucleotide catabolic process	BP
GO:0009167	purine ribonucleoside monophosphate metabolic process	BP
GO:0009168	purine ribonucleoside monophosphate biosynthetic process	BP
GO:0009179	purine ribonucleoside diphosphate metabolic process	BP
GO:0009185	ribonucleoside diphosphate metabolic process	BP
GO:0009199	ribonucleoside triphosphate metabolic process	BP
GO:0009201	ribonucleoside triphosphate biosynthetic process	BP
GO:0009205	purine ribonucleoside triphosphate metabolic process	BP
GO:0009206	purine ribonucleoside triphosphate biosynthetic process	BP
GO:0009259	ribonucleotide metabolic process	BP
GO:0009260	ribonucleotide biosynthetic process	BP
GO:0009266	response to temperature stimulus	BP
GO:0009314	response to radiation	BP
GO:0009408	response to heat	BP
GO:0009416	response to light stimulus	BP
GO:0009506	plasmodesma	CC
GO:0009507	chloroplast	CC
GO:0009532	plastid stroma	CC
GO:0009536	plastid	CC
GO:0009570	chloroplast stroma	CC
GO:0009605	response to external stimulus	BP
GO:0009607	response to biotic stimulus	BP
GO:0009617	response to bacterium	BP
GO:0009628	response to abiotic stimulus	BP
GO:0009743	response to carbohydrate	BP
GO:0009746	response to hexose	BP
GO:0009749	response to glucose	BP
GO:0009987	cellular process	BP
GO:0010033	response to organic substance	BP
GO:0016020	membrane	CC
GO:0016052	carbohydrate catabolic process	BP
GO:0016053	organic acid biosynthetic process	BP
GO:0016301	kinase activity	MF
GO:0016310	phosphorylation	BP
GO:0016740	transferase activity	MF
GO:0016772	transferase activity, transferring phosphorus-containing groups	MF
GO:0016773	phosphotransferase activity, alcohol group as acceptor	MF
GO:0016774	phosphotransferase activity, carboxyl group as acceptor	MF
GO:0017144	xenobiotic metabolic process	BP
GO:0018130	heterocycle biosynthetic process	BP
GO:0019359	nicotinamide nucleotide biosynthetic process	BP
GO:0019362	pyridine nucleotide metabolic process	BP
GO:0019363	pyridine nucleotide biosynthetic process	BP
GO:0019438	aromatic compound biosynthetic process	BP
GO:0019439	aromatic compound catabolic process	BP
GO:0019538	protein metabolic process	BP
GO:0019637	organophosphate metabolic process	BP
GO:0019693	ribose phosphate metabolic process	BP
GO:0019752	carboxylic acid metabolic process	BP
GO:0030054	cell junction	CC
GO:0031090	organelle membrane	CC
GO:0032787	monocarboxylic acid metabolic process	BP
GO:0034284	response to monosaccharide	BP
GO:0034404	nucleobase-containing small molecule biosynthetic process	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034654	nucleobase-containing compound biosynthetic process	BP
GO:0034655	nucleobase-containing compound catabolic process	BP
GO:0036211	protein modification process	BP
GO:0042221	response to chemical	BP
GO:0042866	pyruvate biosynthetic process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043207	response to external biotic stimulus	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043412	macromolecule modification	BP
GO:0043436	oxoacid metabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044248	cellular catabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044270	cellular nitrogen compound catabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044283	small molecule biosynthetic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044434	obsolete chloroplast part	CC
GO:0044435	obsolete plastid part	CC
GO:0044437	obsolete vacuolar part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0046031	ADP metabolic process	BP
GO:0046034	ATP metabolic process	BP
GO:0046390	ribose phosphate biosynthetic process	BP
GO:0046394	carboxylic acid biosynthetic process	BP
GO:0046434	organophosphate catabolic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0046496	nicotinamide nucleotide metabolic process	BP
GO:0046700	heterocycle catabolic process	BP
GO:0046939	nucleotide phosphorylation	BP
GO:0048046	apoplast	CC
GO:0050896	response to stimulus	BP
GO:0051186	obsolete cofactor metabolic process	BP
GO:0051188	obsolete cofactor biosynthetic process	BP
GO:0051704	obsolete multi-organism process	BP
GO:0051707	response to other organism	BP
GO:0055044	symplast	CC
GO:0055086	nucleobase-containing small molecule metabolic process	BP
GO:0071704	organic substance metabolic process	BP
GO:0071944	cell periphery	CC
GO:0072330	monocarboxylic acid biosynthetic process	BP
GO:0072521	purine-containing compound metabolic process	BP
GO:0072522	purine-containing compound biosynthetic process	BP
GO:0072524	pyridine-containing compound metabolic process	BP
GO:0072525	pyridine-containing compound biosynthetic process	BP
GO:0090407	organophosphate biosynthetic process	BP
GO:0098588	bounding membrane of organelle	CC
GO:0098805	membrane	CC
GO:0140096	catalytic activity, acting on a protein	MF
GO:1901135	carbohydrate derivative metabolic process	BP
GO:1901137	carbohydrate derivative biosynthetic process	BP
GO:1901292	nucleoside phosphate catabolic process	BP
GO:1901293	nucleoside phosphate biosynthetic process	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901361	organic cyclic compound catabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901575	organic substance catabolic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901700	response to oxygen-containing compound	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00710	Carbon fixation in photosynthetic organisms	-
map00010	Glycolysis / Gluconeogenesis	Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which often corresponds to operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].