PPGR - Gene Detail

Basic Information

Gene ID	geneMaker00015920 View in Genome Browser
Position	GWHBGXC00000001:4747145-4762039 (+) 14894bp
Gene Type	gene
Gene Description (Protein Product)	Component of the cytochrome b6-f complex; which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI); cyclic electron flow around PSI; and state transitions
Organism	Cinnamomum camphora
Also AS	ATCG00540

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

geneMaker00021625 component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex); which is part of the mitochondrial respiratory chain

geneMaker00028090 Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex); which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

geneMaker00025365 Cytochrome b-c1 complex subunit 9-like

Regulatory gene

geneMaker00000164 MADS-box transcription factor

geneMaker00001778 Agamous-like MADS-box protein AGL9 homolog

geneMaker00007025 dof zinc finger protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0009536	plastid	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00195	Photosynthesis	Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.