Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
geneMaker00025935
View in Genome Browser
Position
GWHBGXC00000011:40596004-40603770 (-)
7766bp
Gene Type
gene
Gene Description (Protein Product)
formate-tetrahydrofolate
Organism
Cinnamomum camphora
Also AS AT1G50480

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
geneMaker00028526 Interconversion of serine and glycine
geneMaker00029379 Cobalamin-independent synthase; Catalytic domain
geneMaker00026017 Homocysteine s-methyltransferase

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004329 formate-tetrahydrofolate ligase activity MF
GO:0004477 methenyltetrahydrofolate cyclohydrolase activity MF
GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity MF
GO:0005488 binding MF
GO:0005507 copper ion binding MF
GO:0005575 cellular_component CC
GO:0005576 extracellular region CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0005886 plasma membrane CC
GO:0006082 organic acid metabolic process BP
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006144 purine nucleobase metabolic process BP
GO:0006575 cellular modified amino acid metabolic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006732 obsolete coenzyme metabolic process BP
GO:0006760 folic acid-containing compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009058 biosynthetic process BP
GO:0009108 obsolete coenzyme biosynthetic process BP
GO:0009112 nucleobase metabolic process BP
GO:0009113 purine nucleobase biosynthetic process BP
GO:0009256 10-formyltetrahydrofolate metabolic process BP
GO:0009257 10-formyltetrahydrofolate biosynthetic process BP
GO:0009396 folic acid-containing compound biosynthetic process BP
GO:0009507 chloroplast CC
GO:0009536 plastid CC
GO:0009719 response to endogenous stimulus BP
GO:0009725 response to hormone BP
GO:0009735 response to cytokinin BP
GO:0009987 cellular process BP
GO:0010033 response to organic substance BP
GO:0010035 response to inorganic substance BP
GO:0010038 response to metal ion BP
GO:0016020 membrane CC
GO:0016053 organic acid biosynthetic process BP
GO:0016491 oxidoreductase activity MF
GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors MF
GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor MF
GO:0016787 hydrolase activity MF
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds MF
GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines MF
GO:0016874 ligase activity MF
GO:0016879 ligase activity, forming carbon-nitrogen bonds MF
GO:0018130 heterocycle biosynthetic process BP
GO:0019238 cyclohydrolase activity MF
GO:0019438 aromatic compound biosynthetic process BP
GO:0019752 carboxylic acid metabolic process BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0042221 response to chemical BP
GO:0042398 cellular modified amino acid biosynthetic process BP
GO:0042440 pigment metabolic process BP
GO:0042558 pteridine-containing compound metabolic process BP
GO:0042559 pteridine-containing compound biosynthetic process BP
GO:0043167 ion binding MF
GO:0043169 cation binding MF
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043436 oxoacid metabolic process BP
GO:0043603 amide metabolic process BP
GO:0043604 amide biosynthetic process BP
GO:0043648 dicarboxylic acid metabolic process BP
GO:0043650 dicarboxylic acid biosynthetic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044281 small molecule metabolic process BP
GO:0044283 small molecule biosynthetic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0046112 nucleobase biosynthetic process BP
GO:0046148 pigment biosynthetic process BP
GO:0046394 carboxylic acid biosynthetic process BP
GO:0046483 heterocycle metabolic process BP
GO:0046653 tetrahydrofolate metabolic process BP
GO:0046654 tetrahydrofolate biosynthetic process BP
GO:0046686 response to cadmium ion BP
GO:0046872 metal ion binding MF
GO:0046914 transition metal ion binding MF
GO:0048046 apoplast CC
GO:0050896 response to stimulus BP
GO:0051186 obsolete cofactor metabolic process BP
GO:0051188 obsolete cofactor biosynthetic process BP
GO:0055086 nucleobase-containing small molecule metabolic process BP
GO:0055114 obsolete oxidation-reduction process BP
GO:0071704 organic substance metabolic process BP
GO:0071944 cell periphery CC
GO:0072521 purine-containing compound metabolic process BP
GO:0072522 purine-containing compound biosynthetic process BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901566 organonitrogen compound biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP
KEGG Term Name Description
map01100 Metabolic pathways -
map00670 One carbon pool by folate -