Basic Information
Gene ID
geneMaker00026277
Position
GWHBGXC00000003:7175126-7184284 (+)
9158bp
Gene Type
gene
Gene Description (Protein Product)
squalene
Organism
Also AS AT1G58440

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
geneMaker00028348 Belongs to the terpene cyclase mutase family
geneMaker00028450 Squalene synthase-like
geneMaker00028799 This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA; which is the substrate for HMG-CoA reductase
Regulatory gene
geneMaker00000164 MADS-box transcription factor
geneMaker00001778 Agamous-like MADS-box protein AGL9 homolog
geneMaker00007025 dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00909 Sesquiterpenoid biosynthesis Sesquiterpenoids (C15 terpenoids) are a group of terpenoids consisting of three isoprene units. They are derive from farnesyl diphosphate (FPP) and can be cyclized to produce various skeletal structures. Sesquiterpenoid biosynthesis begins with the loss of diphosphate from FPP under the action of sesquiterpene synthesis enzymes, generating an allylic cation that is highly susceptible to intramolecular attacks. Cyclization of the farnesyl cation may take place onto either of the remaining double bonds with the result that 6-, 10-, or 11-membered rings may be formed. Many sesquiterpenoids have been isolated from plants, fungi, marine organisms, and Streptomyces species. This map shows a few examples of acyclic and cyclic sesquiterpenoids.
map00100 Steroid biosynthesis -