Basic Information
Gene ID
CKAN_00117800.v3
Position
CKAN.scaff0001:20873685-20889330 (-)
15645bp
Gene Type
gene
Gene Description (Protein Product)
Pre-mRNA-splicing factor
Organism
Also AS AT5G28740

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
CKAN_00408300.v3 pre-mRNA-processing-splicing factor
CKAN_01371500.v3 116 kDa U5 small nuclear ribonucleoprotein
CKAN_02085900.v3 Cell division cycle
Regulatory gene
CKAN_00139800.v3 transcription factor
CKAN_00180600.v3 transcription factor
CKAN_00281900.v3 transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.