Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
Ciclev10018122m.g.v1.0
View in Genome Browser
Position
scaffold_2:30903636-30904496 (-)
860bp
Gene Type
gene
Gene Description (Protein Product)
Small nuclear ribonucleoprotein-associated protein
Organism
Citrus clementina
Also AS AT4G20440CICLE_v10018122mg

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Ciclev10022934m.g.v1.0 Small nuclear ribonucleoprotein
Ciclev10027494m.g.v1.0 spliceosomal snRNP assembly
Ciclev10028992m.g.v1.0 U2 small nuclear ribonucleoprotein
Regulatory gene
Ciclev10000065m.g.v1.0 Protein ALWAYS EARLY
Ciclev10000183m.g.v1.0 Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
Ciclev10000225m.g.v1.0 B3 domain-containing

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.