Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
Ciclev10027494m.g.v1.0
View in Genome Browser
Position
scaffold_7:15556463-15556847 (-)
384bp
Gene Type
gene
Gene Description (Protein Product)
spliceosomal snRNP assembly
Organism
Citrus clementina
Also AS AT4G30330CICLE_v10010045mg

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Ciclev10033061m.g.v1.0 U6 snRNA-associated Sm-like protein
Ciclev10029623m.g.v1.0 PHD finger-like domain-containing protein
Ciclev10033668m.g.v1.0 generation of catalytic spliceosome for first transesterification step

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000245 spliceosomal complex assembly BP
GO:0000375 RNA splicing, via transesterification reactions BP
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile BP
GO:0000387 spliceosomal snRNP assembly BP
GO:0000398 mRNA splicing, via spliceosome BP
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005681 spliceosomal complex CC
GO:0005682 U5 snRNP CC
GO:0005683 U7 snRNP CC
GO:0005684 U2-type spliceosomal complex CC
GO:0005685 U1 snRNP CC
GO:0005686 U2 snRNP CC
GO:0005687 U4 snRNP CC
GO:0005689 U12-type spliceosomal complex CC
GO:0005697 telomerase holoenzyme complex CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006351 DNA-templated transcription BP
GO:0006353 DNA-templated transcription termination BP
GO:0006366 transcription by RNA polymerase II BP
GO:0006369 termination of RNA polymerase II transcription BP
GO:0006396 RNA processing BP
GO:0006397 mRNA processing BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006810 transport BP
GO:0006913 nucleocytoplasmic transport BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008334 histone mRNA metabolic process BP
GO:0008380 RNA splicing BP
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0016043 cellular component organization BP
GO:0016070 RNA metabolic process BP
GO:0016071 mRNA metabolic process BP
GO:0018130 heterocycle biosynthetic process BP
GO:0019438 aromatic compound biosynthetic process BP
GO:0022607 cellular component assembly BP
GO:0022613 ribonucleoprotein complex biogenesis BP
GO:0022618 ribonucleoprotein complex assembly BP
GO:0030532 small nuclear ribonucleoprotein complex CC
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032501 multicellular organismal process BP
GO:0032774 RNA biosynthetic process BP
GO:0032991 protein-containing complex CC
GO:0034622 protein-containing complex assembly BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034645 cellular macromolecule biosynthetic process BP
GO:0034654 nucleobase-containing compound biosynthetic process BP
GO:0034708 methyltransferase complex CC
GO:0034709 methylosome CC
GO:0034715 pICln-Sm protein complex CC
GO:0034719 SMN-Sm protein complex CC
GO:0035770 ribonucleoprotein granule CC
GO:0036464 cytoplasmic ribonucleoprotein granule CC
GO:0042303 molting cycle BP
GO:0042633 hair cycle BP
GO:0043021 ribonucleoprotein complex binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043186 P granule CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043933 protein-containing complex organization BP
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0044877 protein-containing complex binding MF
GO:0045495 pole plasm CC
GO:0046483 heterocycle metabolic process BP
GO:0046540 U4/U6 x U5 tri-snRNP complex CC
GO:0046907 intracellular transport BP
GO:0051169 nuclear transport BP
GO:0051170 import into nucleus BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0060293 germ plasm CC
GO:0065003 protein-containing complex assembly BP
GO:0070013 intracellular organelle lumen CC
GO:0070990 snRNP binding MF
GO:0071007 U2-type catalytic step 2 spliceosome CC
GO:0071011 precatalytic spliceosome CC
GO:0071013 catalytic step 2 spliceosome CC
GO:0071704 organic substance metabolic process BP
GO:0071826 ribonucleoprotein complex subunit organization BP
GO:0071840 cellular component organization or biogenesis BP
GO:0090304 nucleic acid metabolic process BP
GO:0097525 spliceosomal snRNP complex CC
GO:0097526 spliceosomal tri-snRNP complex CC
GO:0097659 nucleic acid-templated transcription BP
GO:0120114 Sm-like protein family complex CC
GO:1901360 organic cyclic compound metabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1902494 catalytic complex CC
GO:1990234 transferase complex CC
GO:1990446 U1 snRNP binding MF
GO:1990904 ribonucleoprotein complex CC
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.