PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	evm.TU.Chr7.325 View in Genome Browser
Position	GWHBISF00000492:4736393-4745974 (+) 9581bp
Gene Type	gene
Gene Description (Protein Product)	Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region
Organism	Eucommia ulmoides
Also AS	AT1G09570

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	evm.TU.Chr9.758 Belongs to the GRAS family evm.TU.Chr8.1982 Protein EARLY FLOWERING evm.TU.Chr7.325 Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region
Regulatory gene	evm.TU.Chr1.1507 Developmental protein SEPALLATA 1-like isoform X1 evm.TU.Chr1.508 MADS-box protein evm.TU.Chr10.1970_evm.TU.Chr10.1971 Floral homeotic protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003723	RNA binding	MF
GO:0003729	mRNA binding	MF
GO:0003824	catalytic activity	MF
GO:0004672	protein kinase activity	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005654	nucleoplasm	CC
GO:0005737	cytoplasm	CC
GO:0006417	regulation of translation	BP
GO:0006464	protein modification process	BP
GO:0006468	protein phosphorylation	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0007154	cell communication	BP
GO:0007165	signal transduction	BP
GO:0007275	multicellular organism development	BP
GO:0007602	phototransduction	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009314	response to radiation	BP
GO:0009416	response to light stimulus	BP
GO:0009581	detection of external stimulus	BP
GO:0009582	detection of abiotic stimulus	BP
GO:0009583	detection of light stimulus	BP
GO:0009585	red, far-red light phototransduction	BP
GO:0009605	response to external stimulus	BP
GO:0009606	tropism	BP
GO:0009628	response to abiotic stimulus	BP
GO:0009629	response to gravity	BP
GO:0009630	gravitropism	BP
GO:0009637	response to blue light	BP
GO:0009638	phototropism	BP
GO:0009639	response to red or far red light	BP
GO:0009640	photomorphogenesis	BP
GO:0009642	response to light intensity	BP
GO:0009791	post-embryonic development	BP
GO:0009881	photoreceptor activity	MF
GO:0009883	red or far-red light photoreceptor activity	MF
GO:0009889	regulation of biosynthetic process	BP
GO:0009890	negative regulation of biosynthetic process	BP
GO:0009892	negative regulation of metabolic process	BP
GO:0009987	cellular process	BP
GO:0010017	red or far-red light signaling pathway	BP
GO:0010018	far-red light signaling pathway	BP
GO:0010114	response to red light	BP
GO:0010161	red light signaling pathway	BP
GO:0010201	response to continuous far red light stimulus by the high-irradiance response system	BP
GO:0010203	response to very low fluence red light stimulus	BP
GO:0010218	response to far red light	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0010558	negative regulation of macromolecule biosynthetic process	BP
GO:0010605	negative regulation of macromolecule metabolic process	BP
GO:0010608	post-transcriptional regulation of gene expression	BP
GO:0010629	negative regulation of gene expression	BP
GO:0016301	kinase activity	MF
GO:0016310	phosphorylation	BP
GO:0016604	nuclear body	CC
GO:0016740	transferase activity	MF
GO:0016772	transferase activity, transferring phosphorus-containing groups	MF
GO:0016773	phosphotransferase activity, alcohol group as acceptor	MF
GO:0017148	negative regulation of translation	BP
GO:0019222	regulation of metabolic process	BP
GO:0019538	protein metabolic process	BP
GO:0023052	signaling	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0031324	negative regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0031327	negative regulation of cellular biosynthetic process	BP
GO:0031516	far-red light photoreceptor activity	MF
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032268	regulation of protein metabolic process	BP
GO:0032269	negative regulation of protein metabolic process	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0034248	regulation of amide metabolic process	BP
GO:0034249	negative regulation of amide metabolic process	BP
GO:0036211	protein modification process	BP
GO:0038023	signaling receptor activity	MF
GO:0042221	response to chemical	BP
GO:0042802	identical protein binding	MF
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043412	macromolecule modification	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044451	obsolete nucleoplasm part	CC
GO:0044464	obsolete cell part	CC
GO:0046685	response to arsenic-containing substance	BP
GO:0048519	negative regulation of biological process	BP
GO:0048523	negative regulation of cellular process	BP
GO:0048856	anatomical structure development	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051172	negative regulation of nitrogen compound metabolic process	BP
GO:0051246	regulation of protein metabolic process	BP
GO:0051248	negative regulation of protein metabolic process	BP
GO:0051606	detection of stimulus	BP
GO:0051716	cellular response to stimulus	BP
GO:0055122	response to very low light intensity stimulus	BP
GO:0060089	molecular transducer activity	MF
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0065007	biological regulation	BP
GO:0070013	intracellular organelle lumen	CC
GO:0071214	cellular response to abiotic stimulus	BP
GO:0071478	cellular response to radiation	BP
GO:0071482	cellular response to light stimulus	BP
GO:0071489	cellular response to red or far red light	BP
GO:0071490	cellular response to far red light	BP
GO:0071491	cellular response to red light	BP
GO:0071704	organic substance metabolic process	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0097159	organic cyclic compound binding	MF
GO:0104004	cellular response to environmental stimulus	BP
GO:0140096	catalytic activity, acting on a protein	MF
GO:1901363	heterocyclic compound binding	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2000113	negative regulation of cellular macromolecule biosynthetic process	BP

KEGG Term	Name	Description
map04712	Circadian rhythm - plant	-