Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
FRAEX38873_v2_000011500
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Position
Contig1073:46715-52471 (-)
5756bp
Gene Type
gene
Gene Description (Protein Product)
Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
Organism
Fraxinus excelsior
Also AS AT5G62000

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
FRAEX38873_v2_000224820 Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
FRAEX38873_v2_000108520 Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
FRAEX38873_v2_000372480 Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
Regulatory gene
FRAEX38873_v2_000003330 Transcription factor DIVARICATA-like
FRAEX38873_v2_000005000 Myb-related protein
FRAEX38873_v2_000008150 Dof zinc finger protein
Target gene
FRAEX38873_v2_000000730 Belongs to the protein kinase superfamily
FRAEX38873_v2_000001050 Protein of unknown function (DUF4005)
FRAEX38873_v2_000001650 Heat shock factor-binding protein 1-like

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0003006 developmental process involved in reproduction BP
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0007275 multicellular organism development BP
GO:0007568 aging BP
GO:0008150 biological_process BP
GO:0009835 fruit ripening BP
GO:0009836 fruit ripening, climacteric BP
GO:0009909 regulation of flower development BP
GO:0009911 positive regulation of flower development BP
GO:0010154 fruit development BP
GO:0021700 developmental maturation BP
GO:0022414 reproductive process BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0042802 identical protein binding MF
GO:0042803 protein homodimerization activity MF
GO:0046982 protein heterodimerization activity MF
GO:0046983 protein dimerization activity MF
GO:0048518 positive regulation of biological process BP
GO:0048580 regulation of post-embryonic development BP
GO:0048582 positive regulation of post-embryonic development BP
GO:0048608 reproductive structure development BP
GO:0048731 system development BP
GO:0048831 regulation of shoot system development BP
GO:0048856 anatomical structure development BP
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0051094 positive regulation of developmental process BP
GO:0051239 regulation of multicellular organismal process BP
GO:0051240 positive regulation of multicellular organismal process BP
GO:0061458 reproductive system development BP
GO:0065007 biological regulation BP
GO:0071695 anatomical structure maturation BP
GO:2000026 regulation of multicellular organismal development BP
GO:2000241 regulation of reproductive process BP
GO:2000243 positive regulation of reproductive process BP
KEGG Term Name Description
map04075 Plant hormone signal transduction -