Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
FRAEX38873_v2_000024590
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Position
Contig1210:108578-109692 (-)
1114bp
Gene Type
gene
Gene Description (Protein Product)
Helix-loop-helix DNA-binding domain
Organism
Fraxinus excelsior
Also AS AT3G28857

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
FRAEX38873_v2_000167640 COP9 signalosome complex subunit
FRAEX38873_v2_000137830 COP9 signalosome complex subunit
FRAEX38873_v2_000230340 Conserved oligomeric Golgi complex
Regulatory gene
FRAEX38873_v2_000003330 Transcription factor DIVARICATA-like
FRAEX38873_v2_000005000 Myb-related protein
FRAEX38873_v2_000008150 Dof zinc finger protein
Target gene
FRAEX38873_v2_000000060 CDK-activating kinase assembly factor MAT1
FRAEX38873_v2_000000600 Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits
FRAEX38873_v2_000001120 Nucleotide-diphospho-sugar transferase

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0008150 biological_process BP
GO:0009314 response to radiation BP
GO:0009416 response to light stimulus BP
GO:0009628 response to abiotic stimulus BP
GO:0050896 response to stimulus BP