Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
FRAEX38873_v2_000139560
View in Genome Browser
Position
Contig2650:92086-93252 (+)
1166bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the MIP aquaporin (TC 1.A.8) family
Organism
Fraxinus excelsior
Also AS AT3G47440

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
FRAEX38873_v2_000205820 Belongs to the MIP aquaporin (TC 1.A.8) family
FRAEX38873_v2_000396800 Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
FRAEX38873_v2_000224000 Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
Regulatory gene
FRAEX38873_v2_000002120 B3 DNA binding domain
FRAEX38873_v2_000008150 Dof zinc finger protein
FRAEX38873_v2_000010330 WRKY transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0000325 plant-type vacuole CC
GO:0003006 developmental process involved in reproduction BP
GO:0003674 molecular_function MF
GO:0005215 transporter activity MF
GO:0005372 water transmembrane transporter activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005739 mitochondrion CC
GO:0005773 vacuole CC
GO:0005774 vacuolar membrane CC
GO:0005886 plasma membrane CC
GO:0005887 plasma membrane CC
GO:0006810 transport BP
GO:0006811 monoatomic ion transport BP
GO:0006833 water transport BP
GO:0007275 multicellular organism development BP
GO:0007276 gamete generation BP
GO:0008150 biological_process BP
GO:0009555 pollen development BP
GO:0009705 plant-type vacuole membrane CC
GO:0009987 cellular process BP
GO:0015204 urea transmembrane transporter activity MF
GO:0015250 water channel activity MF
GO:0015267 channel activity MF
GO:0015318 inorganic molecular entity transmembrane transporter activity MF
GO:0015840 urea transport BP
GO:0016020 membrane CC
GO:0016021 membrane CC
GO:0019755 one-carbon compound transport BP
GO:0019953 sexual reproduction BP
GO:0022412 cellular process involved in reproduction in multicellular organism BP
GO:0022414 reproductive process BP
GO:0022803 passive transmembrane transporter activity MF
GO:0022838 channel activity MF
GO:0022857 transmembrane transporter activity MF
GO:0030154 cell differentiation BP
GO:0031090 organelle membrane CC
GO:0031224 obsolete intrinsic component of membrane CC
GO:0031226 obsolete intrinsic component of plasma membrane CC
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032504 multicellular organism reproduction BP
GO:0034220 monoatomic ion transmembrane transport BP
GO:0042044 fluid transport BP
GO:0042807 central vacuole CC
GO:0042886 amide transport BP
GO:0042887 amide transmembrane transporter activity MF
GO:0042995 cell projection CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044437 obsolete vacuolar part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044459 obsolete plasma membrane part CC
GO:0044464 obsolete cell part CC
GO:0044703 multi-organism reproductive process BP
GO:0048229 gametophyte development BP
GO:0048232 male gamete generation BP
GO:0048235 pollen sperm cell differentiation BP
GO:0048609 multicellular organismal reproductive process BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051704 obsolete multi-organism process BP
GO:0055046 microgametogenesis BP
GO:0055085 transmembrane transport BP
GO:0071702 organic substance transport BP
GO:0071705 nitrogen compound transport BP
GO:0071918 urea transmembrane transport BP
GO:0071944 cell periphery CC
GO:0090406 pollen tube CC
GO:0098588 bounding membrane of organelle CC
GO:0098805 membrane CC
GO:0120025 plasma membrane bounded cell projection CC