Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
FRAEX38873_v2_000162670
View in Genome Browser
Position
Contig3:428408-435315 (-)
6907bp
Gene Type
gene
Gene Description (Protein Product)
Sec7 domain
Organism
Fraxinus excelsior
Also AS AT1G13980

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
FRAEX38873_v2_000194120 Dimerisation and cyclophilin-binding domain of Mon2
FRAEX38873_v2_000265800 Dimerisation and cyclophilin-binding domain of Mon2
FRAEX38873_v2_000284830 Brefeldin A-inhibited guanine nucleotide-exchange protein
Regulatory gene
FRAEX38873_v2_000003330 Transcription factor DIVARICATA-like
FRAEX38873_v2_000005000 Myb-related protein
FRAEX38873_v2_000006700 MYB-CC type transfactor, LHEQLE motif

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0000278 mitotic cell cycle BP
GO:0000281 mitotic cytokinesis BP
GO:0000578 embryonic axis specification BP
GO:0000902 cell morphogenesis BP
GO:0000910 cytokinesis BP
GO:0000911 cytokinesis by cell plate formation BP
GO:0001736 establishment of planar polarity BP
GO:0001738 morphogenesis of a polarized epithelium BP
GO:0002009 morphogenesis of an epithelium BP
GO:0003006 developmental process involved in reproduction BP
GO:0003674 molecular_function MF
GO:0005085 guanyl-nucleotide exchange factor activity MF
GO:0005086 guanyl-nucleotide exchange factor activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005768 endosome CC
GO:0005794 Golgi apparatus CC
GO:0005802 trans-Golgi network CC
GO:0005829 cytosol CC
GO:0005886 plasma membrane CC
GO:0006810 transport BP
GO:0006897 endocytosis BP
GO:0007049 cell cycle BP
GO:0007155 cell adhesion BP
GO:0007164 establishment of tissue polarity BP
GO:0007275 multicellular organism development BP
GO:0007389 pattern specification process BP
GO:0008150 biological_process BP
GO:0009605 response to external stimulus BP
GO:0009606 tropism BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009790 embryo development BP
GO:0009791 post-embryonic development BP
GO:0009793 embryo development ending in seed dormancy BP
GO:0009798 axis specification BP
GO:0009826 unidimensional cell growth BP
GO:0009880 embryonic pattern specification BP
GO:0009888 tissue development BP
GO:0009914 hormone transport BP
GO:0009926 auxin polar transport BP
GO:0009942 longitudinal axis specification BP
GO:0009987 cellular process BP
GO:0010008 endosome membrane CC
GO:0010015 root morphogenesis BP
GO:0010053 root epidermal cell differentiation BP
GO:0010054 trichoblast differentiation BP
GO:0010087 phloem or xylem histogenesis BP
GO:0010101 post-embryonic root morphogenesis BP
GO:0010102 lateral root morphogenesis BP
GO:0010154 fruit development BP
GO:0010274 hydrotropism BP
GO:0010311 lateral root formation BP
GO:0010540 basipetal auxin transport BP
GO:0010817 regulation of hormone levels BP
GO:0012505 endomembrane system CC
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016049 cell growth BP
GO:0016192 vesicle-mediated transport BP
GO:0016197 endosomal transport BP
GO:0019899 enzyme binding MF
GO:0021700 developmental maturation BP
GO:0022402 cell cycle process BP
GO:0022414 reproductive process BP
GO:0022610 obsolete biological adhesion BP
GO:0022622 root system development BP
GO:0030154 cell differentiation BP
GO:0031090 organelle membrane CC
GO:0031410 cytoplasmic vesicle CC
GO:0031982 vesicle CC
GO:0031984 organelle subcompartment CC
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032506 cytokinetic process BP
GO:0032509 endosome transport via multivesicular body sorting pathway BP
GO:0032879 regulation of localization BP
GO:0032989 cellular component morphogenesis BP
GO:0040007 growth BP
GO:0042802 identical protein binding MF
GO:0042803 protein homodimerization activity MF
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044431 obsolete Golgi apparatus part CC
GO:0044433 obsolete cytoplasmic vesicle part CC
GO:0044440 obsolete endosomal part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0045229 external encapsulating structure organization BP
GO:0046907 intracellular transport BP
GO:0046983 protein dimerization activity MF
GO:0048209 regulation of vesicle targeting, to, from or within Golgi BP
GO:0048316 seed development BP
GO:0048364 root development BP
GO:0048468 cell development BP
GO:0048469 cell maturation BP
GO:0048527 lateral root development BP
GO:0048528 post-embryonic root development BP
GO:0048589 developmental growth BP
GO:0048608 reproductive structure development BP
GO:0048646 anatomical structure formation involved in morphogenesis BP
GO:0048729 tissue morphogenesis BP
GO:0048731 system development BP
GO:0048764 trichoblast maturation BP
GO:0048765 root hair cell differentiation BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051020 GTPase binding MF
GO:0051049 regulation of transport BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051301 cell division BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0060341 regulation of cellular localization BP
GO:0060429 epithelium development BP
GO:0060560 developmental growth involved in morphogenesis BP
GO:0060627 regulation of vesicle-mediated transport BP
GO:0060918 auxin transport BP
GO:0061458 reproductive system development BP
GO:0061640 cytoskeleton-dependent cytokinesis BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0065009 regulation of molecular function BP
GO:0071554 cell wall organization or biogenesis BP
GO:0071555 cell wall organization BP
GO:0071695 anatomical structure maturation BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC
GO:0071985 multivesicular body sorting pathway BP
GO:0090558 plant epidermis development BP
GO:0090627 plant epidermal cell differentiation BP
GO:0090696 post-embryonic plant organ development BP
GO:0090697 post-embryonic plant organ morphogenesis BP
GO:0090698 post-embryonic plant morphogenesis BP
GO:0097708 intracellular vesicle CC
GO:0098588 bounding membrane of organelle CC
GO:0098657 import into cell BP
GO:0098772 molecular function regulator activity MF
GO:0098791 Golgi apparatus subcompartment CC
GO:0098805 membrane CC
GO:0099402 plant organ development BP
GO:1902410 mitotic cytokinetic process BP
GO:1903047 mitotic cell cycle process BP
GO:1905392 plant organ morphogenesis BP
GO:1905393 plant organ formation BP
KEGG Term Name Description
map04144 Endocytosis Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.