PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	FRAEX38873_v2_000201540 View in Genome Browser
Position	Contig3689:73554-74624 (+) 1070bp
Gene Type	gene
Gene Description (Protein Product)	Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Organism	Fraxinus excelsior
Also AS	AT1G04240

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	FRAEX38873_v2_000309970 Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) FRAEX38873_v2_000230180 Protein TRANSPORT INHIBITOR RESPONSE 1-like FRAEX38873_v2_000366150 Transport inhibitor response
Regulatory gene	FRAEX38873_v2_000002120 B3 DNA binding domain FRAEX38873_v2_000003330 Transcription factor DIVARICATA-like FRAEX38873_v2_000005000 Myb-related protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0008150	biological_process	BP
GO:0009719	response to endogenous stimulus	BP
GO:0009725	response to hormone	BP
GO:0009733	response to auxin	BP
GO:0010033	response to organic substance	BP
GO:0042221	response to chemical	BP
GO:0050896	response to stimulus	BP

KEGG Term	Name	Description
map04075	Plant hormone signal transduction	-