PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	FRAEX38873_v2_000215420 View in Genome Browser
Position	Contig3967:35276-42169 (+) 6893bp
Gene Type	gene
Gene Description (Protein Product)	"ATPase 10
Organism	Fraxinus excelsior
Also AS	AT1G17260

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	FRAEX38873_v2_000382270 calcium-dependent protein kinase FRAEX38873_v2_000361430 Soluble inorganic pyrophosphatase FRAEX38873_v2_000378850 EF-hand domain
Regulatory gene	FRAEX38873_v2_000003090 Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) FRAEX38873_v2_000003330 Transcription factor DIVARICATA-like FRAEX38873_v2_000005000 Myb-related protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0000325	plant-type vacuole	CC
GO:0003006	developmental process involved in reproduction	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005215	transporter activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005773	vacuole	CC
GO:0005774	vacuolar membrane	CC
GO:0005911	cell-cell junction	CC
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006810	transport	BP
GO:0006811	monoatomic ion transport	BP
GO:0006812	monoatomic cation transport	BP
GO:0006873	intracellular monoatomic ion homeostasis	BP
GO:0006885	regulation of pH	BP
GO:0006996	organelle organization	BP
GO:0007033	vacuole organization	BP
GO:0007035	vacuolar acidification	BP
GO:0007275	multicellular organism development	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008324	monoatomic cation transmembrane transporter activity	MF
GO:0008553	P-type proton-exporting transporter activity	MF
GO:0009058	biosynthetic process	BP
GO:0009506	plasmodesma	CC
GO:0009507	chloroplast	CC
GO:0009536	plastid	CC
GO:0009698	phenylpropanoid metabolic process	BP
GO:0009699	phenylpropanoid biosynthetic process	BP
GO:0009705	plant-type vacuole membrane	CC
GO:0009791	post-embryonic development	BP
GO:0009987	cellular process	BP
GO:0010023	proanthocyanidin biosynthetic process	BP
GO:0010154	fruit development	BP
GO:0010214	seed coat development	BP
GO:0015075	monoatomic ion transmembrane transporter activity	MF
GO:0015077	inorganic cation transmembrane transporter activity	MF
GO:0015078	proton transmembrane transporter activity	MF
GO:0015318	inorganic molecular entity transmembrane transporter activity	MF
GO:0015399	primary active transmembrane transporter activity	MF
GO:0015405	ATPase-coupled transmembrane transporter activity	MF
GO:0015662	P-type ion transporter activity	MF
GO:0015672	inorganic cation transmembrane transport	BP
GO:0016020	membrane	CC
GO:0016043	cellular component organization	BP
GO:0016462	pyrophosphatase activity	MF
GO:0016787	hydrolase activity	MF
GO:0016817	hydrolase activity, acting on acid anhydrides	MF
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	MF
GO:0016887	ATP hydrolysis activity	MF
GO:0017111	ribonucleoside triphosphate phosphatase activity	MF
GO:0017144	xenobiotic metabolic process	BP
GO:0018130	heterocycle biosynthetic process	BP
GO:0018958	phenol-containing compound metabolic process	BP
GO:0019438	aromatic compound biosynthetic process	BP
GO:0019725	cellular homeostasis	BP
GO:0019748	secondary metabolic process	BP
GO:0019829	ATPase-coupled monoatomic cation transmembrane transporter activity	MF
GO:0022414	reproductive process	BP
GO:0022804	active transmembrane transporter activity	MF
GO:0022853	active monoatomic ion transmembrane transporter activity	MF
GO:0022857	transmembrane transporter activity	MF
GO:0022890	inorganic cation transmembrane transporter activity	MF
GO:0030003	intracellular monoatomic cation homeostasis	BP
GO:0030004	obsolete cellular monovalent inorganic cation homeostasis	BP
GO:0030054	cell junction	CC
GO:0030641	regulation of cellular pH	BP
GO:0031090	organelle membrane	CC
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0034220	monoatomic ion transmembrane transport	BP
GO:0036442	P-type proton-exporting transporter activity	MF
GO:0042592	homeostatic process	BP
GO:0042623	ATP hydrolysis activity	MF
GO:0042625	ATPase-coupled ion transmembrane transporter activity	MF
GO:0042626	ATPase-coupled transmembrane transporter activity	MF
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043492	ATPase-coupled transmembrane transporter activity	MF
GO:0044237	cellular metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044437	obsolete vacuolar part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0044550	secondary metabolite biosynthetic process	BP
GO:0045851	pH reduction	BP
GO:0046189	phenol-containing compound biosynthetic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0048316	seed development	BP
GO:0048608	reproductive structure development	BP
GO:0048731	system development	BP
GO:0048856	anatomical structure development	BP
GO:0048878	chemical homeostasis	BP
GO:0050801	monoatomic ion homeostasis	BP
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0051452	intracellular pH reduction	BP
GO:0051453	regulation of intracellular pH	BP
GO:0055044	symplast	CC
GO:0055067	obsolete monovalent inorganic cation homeostasis	BP
GO:0055080	monoatomic cation homeostasis	BP
GO:0055082	intracellular chemical homeostasis	BP
GO:0055085	transmembrane transport	BP
GO:0061458	reproductive system development	BP
GO:0065007	biological regulation	BP
GO:0065008	regulation of biological quality	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0090662	transmembrane transport	BP
GO:0098588	bounding membrane of organelle	CC
GO:0098655	monoatomic cation transmembrane transport	BP
GO:0098660	inorganic ion transmembrane transport	BP
GO:0098662	inorganic cation transmembrane transport	BP
GO:0098771	inorganic ion homeostasis	BP
GO:0098805	membrane	CC
GO:0099131	monoatomic ion transmembrane transport	BP
GO:0099132	monoatomic cation transmembrane transport	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901615	organic hydroxy compound metabolic process	BP
GO:1901617	organic hydroxy compound biosynthetic process	BP
GO:1902600	proton transmembrane transport	BP

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00190	Oxidative phosphorylation	-