Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
FRAEX38873_v2_000334260
View in Genome Browser
Position
Contig71952:65-1329 (+)
1264bp
Gene Type
gene
Gene Description (Protein Product)
Brefeldin A-inhibited guanine nucleotide-exchange protein
Organism
Fraxinus excelsior
Also AS AT3G43300

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
FRAEX38873_v2_000352860 Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
FRAEX38873_v2_000396800 Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
FRAEX38873_v2_000349190 ubiquitin-60S ribosomal protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000139 Golgi membrane CC
GO:0002376 immune system process BP
GO:0003674 molecular_function MF
GO:0005085 guanyl-nucleotide exchange factor activity MF
GO:0005086 guanyl-nucleotide exchange factor activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005730 nucleolus CC
GO:0005737 cytoplasm CC
GO:0005768 endosome CC
GO:0005769 early endosome CC
GO:0005794 Golgi apparatus CC
GO:0005802 trans-Golgi network CC
GO:0005829 cytosol CC
GO:0006810 transport BP
GO:0006887 exocytosis BP
GO:0006950 response to stress BP
GO:0006952 defense response BP
GO:0006955 immune response BP
GO:0006996 organelle organization BP
GO:0007030 Golgi organization BP
GO:0008064 regulation of actin polymerization or depolymerization BP
GO:0008092 cytoskeletal protein binding MF
GO:0008150 biological_process BP
GO:0009605 response to external stimulus BP
GO:0009607 response to biotic stimulus BP
GO:0009617 response to bacterium BP
GO:0009889 regulation of biosynthetic process BP
GO:0009891 positive regulation of biosynthetic process BP
GO:0009893 positive regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0010256 endomembrane system organization BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010557 positive regulation of macromolecule biosynthetic process BP
GO:0010559 regulation of glycoprotein biosynthetic process BP
GO:0010560 positive regulation of glycoprotein biosynthetic process BP
GO:0010604 positive regulation of macromolecule metabolic process BP
GO:0010639 negative regulation of organelle organization BP
GO:0012505 endomembrane system CC
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016192 vesicle-mediated transport BP
GO:0016363 nuclear matrix CC
GO:0017022 myosin binding MF
GO:0019222 regulation of metabolic process BP
GO:0019899 enzyme binding MF
GO:0030532 small nuclear ribonucleoprotein complex CC
GO:0030832 regulation of actin filament length BP
GO:0030833 regulation of actin filament polymerization BP
GO:0030837 negative regulation of actin filament polymerization BP
GO:0031090 organelle membrane CC
GO:0031323 regulation of cellular metabolic process BP
GO:0031325 positive regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031328 positive regulation of cellular biosynthetic process BP
GO:0031333 negative regulation of protein-containing complex assembly BP
GO:0031399 regulation of protein modification process BP
GO:0031401 positive regulation of protein modification process BP
GO:0031410 cytoplasmic vesicle CC
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0031982 vesicle CC
GO:0031984 organelle subcompartment CC
GO:0032268 regulation of protein metabolic process BP
GO:0032270 positive regulation of protein metabolic process BP
GO:0032271 regulation of protein polymerization BP
GO:0032272 negative regulation of protein polymerization BP
GO:0032535 regulation of cellular component size BP
GO:0032878 regulation of establishment or maintenance of cell polarity BP
GO:0032940 secretion by cell BP
GO:0032956 regulation of actin cytoskeleton organization BP
GO:0032970 regulation of actin filament-based process BP
GO:0032991 protein-containing complex CC
GO:0033043 regulation of organelle organization BP
GO:0034237 protein kinase A regulatory subunit binding MF
GO:0034260 negative regulation of GTPase activity BP
GO:0034399 nuclear periphery CC
GO:0040007 growth BP
GO:0042742 defense response to bacterium BP
GO:0043086 negative regulation of catalytic activity BP
GO:0043087 regulation of GTPase activity BP
GO:0043207 response to external biotic stimulus BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043254 regulation of protein-containing complex assembly BP
GO:0044087 regulation of cellular component biogenesis BP
GO:0044092 negative regulation of molecular function BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044431 obsolete Golgi apparatus part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0045087 innate immune response BP
GO:0046903 secretion BP
GO:0048471 perinuclear region of cytoplasm CC
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048523 negative regulation of cellular process BP
GO:0048583 regulation of response to stimulus BP
GO:0048584 positive regulation of response to stimulus BP
GO:0050789 regulation of biological process BP
GO:0050790 regulation of catalytic activity BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051018 protein kinase A binding MF
GO:0051020 GTPase binding MF
GO:0051128 regulation of cellular component organization BP
GO:0051129 negative regulation of cellular component organization BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051173 positive regulation of nitrogen compound metabolic process BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051246 regulation of protein metabolic process BP
GO:0051247 positive regulation of protein metabolic process BP
GO:0051336 regulation of hydrolase activity BP
GO:0051346 negative regulation of hydrolase activity BP
GO:0051493 regulation of cytoskeleton organization BP
GO:0051494 negative regulation of cytoskeleton organization BP
GO:0051704 obsolete multi-organism process BP
GO:0051707 response to other organism BP
GO:0060049 regulation of protein glycosylation BP
GO:0060050 positive regulation of protein glycosylation BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0061041 regulation of wound healing BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0065009 regulation of molecular function BP
GO:0070013 intracellular organelle lumen CC
GO:0071840 cellular component organization or biogenesis BP
GO:0080090 regulation of primary metabolic process BP
GO:0080134 regulation of response to stress BP
GO:0090066 regulation of anatomical structure size BP
GO:0090283 obsolete regulation of protein glycosylation in Golgi BP
GO:0090284 obsolete positive regulation of protein glycosylation in Golgi BP
GO:0090303 positive regulation of wound healing BP
GO:0097708 intracellular vesicle CC
GO:0098542 defense response to other organism BP
GO:0098588 bounding membrane of organelle CC
GO:0098772 molecular function regulator activity MF
GO:0098791 Golgi apparatus subcompartment CC
GO:0110053 regulation of actin filament organization BP
GO:0120114 Sm-like protein family complex CC
GO:1902903 regulation of supramolecular fiber organization BP
GO:1902904 negative regulation of supramolecular fiber organization BP
GO:1903018 regulation of glycoprotein metabolic process BP
GO:1903020 positive regulation of glycoprotein metabolic process BP
GO:1903034 regulation of response to wounding BP
GO:1903036 positive regulation of response to wounding BP
GO:1990904 ribonucleoprotein complex CC
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2000114 regulation of establishment of cell polarity BP