PPGR - Gene Detail

Basic Information

Gene ID	FRAEX38873_v2_000372300 View in Genome Browser
Position	Contig87:181016-182558 (+) 1542bp
Gene Type	gene
Gene Description (Protein Product)	Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Organism	Fraxinus excelsior
Also AS	AT5G43700

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

FRAEX38873_v2_000385680 Transport inhibitor response

FRAEX38873_v2_000396800 Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked

FRAEX38873_v2_000386040 Topless-related protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0001067	transcription regulatory region nucleic acid binding	MF
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003677	DNA binding	MF
GO:0003700	DNA-binding transcription factor activity	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0006355	regulation of DNA-templated transcription	BP
GO:0008150	biological_process	BP
GO:0009719	response to endogenous stimulus	BP
GO:0009725	response to hormone	BP
GO:0009733	response to auxin	BP
GO:0009889	regulation of biosynthetic process	BP
GO:0010033	response to organic substance	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0042221	response to chemical	BP
GO:0042802	identical protein binding	MF
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043565	sequence-specific DNA binding	MF
GO:0044212	transcription cis-regulatory region binding	MF
GO:0044424	obsolete intracellular part	CC
GO:0044464	obsolete cell part	CC
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0065007	biological regulation	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0097159	organic cyclic compound binding	MF
GO:0140110	transcription regulator activity	MF
GO:1901363	heterocyclic compound binding	MF
GO:1903506	regulation of nucleic acid-templated transcription	BP
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2001141	regulation of RNA biosynthetic process	BP

KEGG Term	Name	Description
map04075	Plant hormone signal transduction	-