Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
FRAEX38873_v2_000373630
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Position
Contig876:5221-17962 (+)
12741bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the STXBP unc-18 SEC1 family
Organism
Fraxinus excelsior
Also AS AT3G54860

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
FRAEX38873_v2_000396800 Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
FRAEX38873_v2_000397650 Belongs to the synaptobrevin family
FRAEX38873_v2_000381390 Belongs to the synaptobrevin family

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005768 endosome CC
GO:0012505 endomembrane system CC
GO:0016020 membrane CC
GO:0030897 HOPS complex CC
GO:0031410 cytoplasmic vesicle CC
GO:0031982 vesicle CC
GO:0032991 protein-containing complex CC
GO:0033263 CORVET complex CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044433 obsolete cytoplasmic vesicle part CC
GO:0044440 obsolete endosomal part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0097708 intracellular vesicle CC
GO:0098796 membrane protein complex CC
GO:0099023 vesicle tethering complex CC