Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Ginchr2.1306
View in Genome Browser
Position
GWHBAVD00000004:475598045-475600264 (-)
2219bp
Gene Type
gene
Gene Description (Protein Product)
nicastrin
Organism
Ginkgo biloba
Also AS AT3G52640evm.TU.chr2.1306

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Ginchr6.805 Presenilin enhancer-2 subunit of gamma secretase
Ginchr4.971 subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors
Ginchr6.1549 Notchless protein homolog
Regulatory gene
Ginchr1.1198 Zinc finger protein
Ginchr1.1713 Zinc finger protein
Ginchr1.1943 (NAC) domain-containing protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004175 endopeptidase activity MF
GO:0005575 cellular_component CC
GO:0005623 obsolete cell CC
GO:0005886 plasma membrane CC
GO:0005887 plasma membrane CC
GO:0006508 proteolysis BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008233 peptidase activity MF
GO:0010467 gene expression BP
GO:0016020 membrane CC
GO:0016021 membrane CC
GO:0016485 protein processing BP
GO:0016787 hydrolase activity MF
GO:0019538 protein metabolic process BP
GO:0031224 obsolete intrinsic component of membrane CC
GO:0031226 obsolete intrinsic component of plasma membrane CC
GO:0043170 macromolecule metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044425 obsolete membrane part CC
GO:0044459 obsolete plasma membrane part CC
GO:0044464 obsolete cell part CC
GO:0051604 protein maturation BP
GO:0070011 peptidase activity MF
GO:0071704 organic substance metabolic process BP
GO:0071944 cell periphery CC
GO:0140096 catalytic activity, acting on a protein MF
GO:1901564 organonitrogen compound metabolic process BP