Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
JcaChr11G11820.g
View in Genome Browser
Position
chr11:26164633-26173674 (-)
9041bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family
Organism
Juglans cathayensis
Also AS AT5G42080

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
JcaChr16G11186.g May act as a component of the auxin efflux carrier
JcaChr15G11953.g May act as a component of the auxin efflux carrier
JcaChr11G11820.g Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family
Regulatory gene
JcaChr01G10316.g AP2-like ethylene-responsive transcription factor
JcaChr01G10545.g Transcription factor
JcaChr01G11706.g Floral homeotic protein APETALA

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0000266 mitochondrial fission BP
GO:0000278 mitotic cell cycle BP
GO:0000280 nuclear division BP
GO:0000281 mitotic cytokinesis BP
GO:0000902 cell morphogenesis BP
GO:0000904 cell morphogenesis involved in differentiation BP
GO:0000910 cytokinesis BP
GO:0000911 cytokinesis by cell plate formation BP
GO:0000919 cell plate assembly BP
GO:0003002 regionalization BP
GO:0003006 developmental process involved in reproduction BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0003924 GTPase activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005773 vacuole CC
GO:0005774 vacuolar membrane CC
GO:0005829 cytosol CC
GO:0005856 cytoskeleton CC
GO:0005874 microtubule CC
GO:0005886 plasma membrane CC
GO:0005911 cell-cell junction CC
GO:0006810 transport BP
GO:0006897 endocytosis BP
GO:0006898 receptor-mediated endocytosis BP
GO:0006996 organelle organization BP
GO:0007005 mitochondrion organization BP
GO:0007049 cell cycle BP
GO:0007275 multicellular organism development BP
GO:0007389 pattern specification process BP
GO:0008017 microtubule binding MF
GO:0008092 cytoskeletal protein binding MF
GO:0008150 biological_process BP
GO:0009504 cell plate CC
GO:0009506 plasmodesma CC
GO:0009507 chloroplast CC
GO:0009524 phragmoplast CC
GO:0009534 chloroplast thylakoid CC
GO:0009535 chloroplast thylakoid membrane CC
GO:0009536 plastid CC
GO:0009579 thylakoid CC
GO:0009653 anatomical structure morphogenesis BP
GO:0009790 embryo development BP
GO:0009791 post-embryonic development BP
GO:0009793 embryo development ending in seed dormancy BP
GO:0009832 plant-type cell wall biogenesis BP
GO:0009888 tissue development BP
GO:0009920 cell plate formation involved in plant-type cell wall biogenesis BP
GO:0009987 cellular process BP
GO:0010015 root morphogenesis BP
GO:0010026 trichome differentiation BP
GO:0010051 xylem and phloem pattern formation BP
GO:0010053 root epidermal cell differentiation BP
GO:0010054 trichoblast differentiation BP
GO:0010090 trichome morphogenesis BP
GO:0010091 trichome branching BP
GO:0010154 fruit development BP
GO:0015630 microtubule cytoskeleton CC
GO:0015631 tubulin binding MF
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016192 vesicle-mediated transport BP
GO:0016462 pyrophosphatase activity MF
GO:0016787 hydrolase activity MF
GO:0016817 hydrolase activity, acting on acid anhydrides MF
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides MF
GO:0017111 ribonucleoside triphosphate phosphatase activity MF
GO:0019899 enzyme binding MF
GO:0019900 kinase binding MF
GO:0019901 protein kinase binding MF
GO:0021700 developmental maturation BP
GO:0022402 cell cycle process BP
GO:0022414 reproductive process BP
GO:0022607 cellular component assembly BP
GO:0022622 root system development BP
GO:0030054 cell junction CC
GO:0030154 cell differentiation BP
GO:0030276 clathrin binding MF
GO:0031090 organelle membrane CC
GO:0031976 plastid thylakoid CC
GO:0031984 organelle subcompartment CC
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032506 cytokinetic process BP
GO:0032878 regulation of establishment or maintenance of cell polarity BP
GO:0032989 cellular component morphogenesis BP
GO:0034357 photosynthetic membrane CC
GO:0042546 cell wall biogenesis BP
GO:0042651 thylakoid membrane CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043424 protein histidine kinase binding MF
GO:0044085 cellular component biogenesis BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044430 obsolete cytoskeletal part CC
GO:0044434 obsolete chloroplast part CC
GO:0044435 obsolete plastid part CC
GO:0044436 obsolete thylakoid part CC
GO:0044437 obsolete vacuolar part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0048285 organelle fission BP
GO:0048316 seed development BP
GO:0048364 root development BP
GO:0048468 cell development BP
GO:0048469 cell maturation BP
GO:0048608 reproductive structure development BP
GO:0048731 system development BP
GO:0048764 trichoblast maturation BP
GO:0048765 root hair cell differentiation BP
GO:0048766 root hair initiation BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051301 cell division BP
GO:0055035 plastid thylakoid membrane CC
GO:0055044 symplast CC
GO:0061458 reproductive system development BP
GO:0061640 cytoskeleton-dependent cytokinesis BP
GO:0065007 biological regulation BP
GO:0071554 cell wall organization or biogenesis BP
GO:0071669 plant-type cell wall organization or biogenesis BP
GO:0071695 anatomical structure maturation BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC
GO:0072583 clathrin-dependent endocytosis BP
GO:0090558 plant epidermis development BP
GO:0090626 plant epidermis morphogenesis BP
GO:0090627 plant epidermal cell differentiation BP
GO:0098588 bounding membrane of organelle CC
GO:0098657 import into cell BP
GO:0098805 membrane CC
GO:0099080 supramolecular complex CC
GO:0099081 supramolecular polymer CC
GO:0099402 plant organ development BP
GO:0099512 supramolecular fiber CC
GO:0099513 polymeric cytoskeletal fiber CC
GO:0140014 mitotic nuclear division BP
GO:1902410 mitotic cytokinetic process BP
GO:1903047 mitotic cell cycle process BP
GO:1905392 plant organ morphogenesis BP
GO:2000114 regulation of establishment of cell polarity BP
KEGG Term Name Description
map04144 Endocytosis Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.