PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	JcaChr14G10070.g View in Genome Browser
Position	chr14:6448456-6448788 (+) 332bp
Gene Type	gene
Gene Description (Protein Product)	PHD finger-like domain-containing protein
Organism	Juglans cathayensis
Also AS	AT1G07170

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	JcaChr16G10008.g Splicing factor 3B subunit JcaChr14G10966.g Splicing factor 3B subunit 6-like protein JcaChr16G11408.g 116 kDa U5 small nuclear ribonucleoprotein
Regulatory gene	JcaChr01G12547.g Dof zinc finger protein JcaChr01G12589.g dof zinc finger protein JcaChr02G10149.g Dof zinc finger protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map03040	Spliceosome	After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.