Basic Information
Gene ID
JhiChr13G10243.g
Position
chr13:20730681-20732525 (-)
1844bp
Gene Type
gene
Gene Description (Protein Product)
Splicing factor U2af small subunit
Organism
Also AS AT1G27650

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
JhiChr15G10518.g Splicing factor U2af large subunit
JhiChr13G11491.g RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
JhiChr13G10243.g Splicing factor U2af small subunit
Regulatory gene
JhiChr01G10351.g Tesmin/TSO1-like CXC domain
JhiChr01G10819.g dof zinc finger protein
JhiChr01G11697.g dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.