Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Juni_Chr11.1123.g
View in Genome Browser
Position
Chr11:17996425-18000975 (-)
4550bp
Gene Type
gene
Gene Description (Protein Product)
Chromatin assembly factor 1 subunit
Organism
Juglans nigra
Also AS AT1G65470

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Juni_Chr7.154.g DNA polymerase
Juni_Chr5.1318.g Peptidylprolyl isomerase domain and WD repeat-containing protein
Juni_Chr14.201.g WD-40 repeat-containing protein
Regulatory gene
Juni_Chr1.1032.g START domain
Juni_Chr1.1051.g transcription factor
Juni_Chr1.1052.g SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000724 double-strand break repair via homologous recombination BP
GO:0000725 recombinational repair BP
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006259 DNA metabolic process BP
GO:0006281 DNA repair BP
GO:0006302 double-strand break repair BP
GO:0006310 DNA recombination BP
GO:0006323 chromosome organization BP
GO:0006325 chromatin organization BP
GO:0006333 chromatin organization BP
GO:0006334 nucleosome assembly BP
GO:0006338 chromatin remodeling BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0006974 cellular response to DNA damage stimulus BP
GO:0006996 organelle organization BP
GO:0007275 multicellular organism development BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008283 cell population proliferation BP
GO:0009555 pollen development BP
GO:0009888 tissue development BP
GO:0009934 regulation of meristem structural organization BP
GO:0009987 cellular process BP
GO:0010026 trichome differentiation BP
GO:0016043 cellular component organization BP
GO:0022603 regulation of anatomical structure morphogenesis BP
GO:0022607 cellular component assembly BP
GO:0030154 cell differentiation BP
GO:0031497 chromatin organization BP
GO:0031507 heterochromatin formation BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032991 protein-containing complex CC
GO:0033186 CAF-1 complex CC
GO:0033554 cellular response to stress BP
GO:0034622 protein-containing complex assembly BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034728 nucleosome organization BP
GO:0042393 histone binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043933 protein-containing complex organization BP
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044464 obsolete cell part CC
GO:0045787 positive regulation of cell cycle BP
GO:0046483 heterocycle metabolic process BP
GO:0048229 gametophyte development BP
GO:0048366 leaf development BP
GO:0048367 shoot system development BP
GO:0048509 regulation of meristem development BP
GO:0048518 positive regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048731 system development BP
GO:0048827 phyllome development BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051276 chromosome organization BP
GO:0051716 cellular response to stimulus BP
GO:0051726 regulation of cell cycle BP
GO:0065003 protein-containing complex assembly BP
GO:0065004 protein-DNA complex assembly BP
GO:0065007 biological regulation BP
GO:0070828 heterochromatin organization BP
GO:0071103 DNA conformation change BP
GO:0071704 organic substance metabolic process BP
GO:0071824 protein-DNA complex subunit organization BP
GO:0071840 cellular component organization or biogenesis BP
GO:0090304 nucleic acid metabolic process BP
GO:0090558 plant epidermis development BP
GO:0099402 plant organ development BP
GO:1901360 organic cyclic compound metabolic process BP