PPGR - Gene Detail

Basic Information

Gene ID	Juni_Chr7.2476.g View in Genome Browser
Position	Chr7:38824715-38836497 (-) 11782bp
Gene Type	gene
Gene Description (Protein Product)	acireductone dioxygenase [iron(II)-requiring] activity
Organism	Juglans nigra
Also AS	AT4G14710

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Juni_Chr7.2476.g acireductone dioxygenase [iron(II)-requiring] activity

Juni_Chr7.2890.g Photosystem I reaction center subunit

Juni_Chr9.1584.g Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000096	sulfur amino acid metabolic process	BP
GO:0000097	sulfur amino acid biosynthetic process	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0005886	plasma membrane	CC
GO:0006082	organic acid metabolic process	BP
GO:0006520	amino acid metabolic process	BP
GO:0006555	methionine metabolic process	BP
GO:0006790	sulfur compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008652	amino acid biosynthetic process	BP
GO:0009058	biosynthetic process	BP
GO:0009066	aspartate family amino acid metabolic process	BP
GO:0009067	aspartate family amino acid biosynthetic process	BP
GO:0009086	methionine biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0010309	acireductone dioxygenase [iron(II)-requiring] activity	MF
GO:0016020	membrane	CC
GO:0016053	organic acid biosynthetic process	BP
GO:0016491	oxidoreductase activity	MF
GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	MF
GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	MF
GO:0017144	xenobiotic metabolic process	BP
GO:0019509	L-methionine salvage from methylthioadenosine	BP
GO:0019752	carboxylic acid metabolic process	BP
GO:0043094	cellular metabolic compound salvage	BP
GO:0043102	amino acid salvage	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043436	oxoacid metabolic process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044272	sulfur compound biosynthetic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044283	small molecule biosynthetic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0046394	carboxylic acid biosynthetic process	BP
GO:0048518	positive regulation of biological process	BP
GO:0050789	regulation of biological process	BP
GO:0051213	dioxygenase activity	MF
GO:0055114	obsolete oxidation-reduction process	BP
GO:0065007	biological regulation	BP
GO:0071265	L-methionine biosynthetic process	BP
GO:0071267	L-methionine salvage	BP
GO:0071704	organic substance metabolic process	BP
GO:0071944	cell periphery	CC
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901605	alpha-amino acid metabolic process	BP
GO:1901607	alpha-amino acid biosynthetic process	BP
GO:2000241	regulation of reproductive process	BP
GO:2000243	positive regulation of reproductive process	BP

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00270	Cysteine and methionine metabolism	Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].