Basic Information
Gene ID
JreChr13G10845
Position
chr13:22978745-22979572 (-)
827bp
Gene Type
gene
Gene Description (Protein Product)
Small nuclear ribonucleoprotein-associated protein
Organism
Also AS AT4G20440

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
JreChr16G10684 116 kDa U5 small nuclear ribonucleoprotein
JreChr16G11179 U6 snRNA-associated Sm-like protein
JreChr13G11099 U6 snRNA-associated Sm-like protein
Regulatory gene
JreChr01G10089 dof zinc finger protein
JreChr01G10237 Protein LHY-like isoform X1
JreChr01G10385 Zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.